NDVI and Weather preprocessing update. Fixed both pixel and parcel mode, smoother and faster processing. Data download and processing is functional. Parcel mode has received a large update. Environment file updated.

New functions to download S2 Copernicus data. Functional scripts. Resolution handling has to be added for Theia and LandSat.

Modification of data directory structure. Modifications in all codes accordingly, not all scripts have been tested. Documentation, comment changes. Future changes to come.

Changes in NDVI calculation scripts for faster preprocessing. Various improvements and code changes. Added json config file example.

Various improvements and bug corrections: fixed ndvi pixel clipping, adjusted memory requirement calculation, added one variable (footprint) for pixel GIF plotting. Other small changes.

Added THEIA and LandSat image download and management. Improved and simplified input preparation for parcel mode. Rewrote model calculation memory estimation function. Corrected small bugs.

Input preparation changes, 20m resolution now functional for SCIHUB. Updated some input and ouput scripts.

Fixed irrigation equations. Small readability and performance updates. Changes in input preparation.

Bug correction in shapefile conversion, improved parcel output results. Pixel and Parcel results now match relatively well. Added a method to add output parcel data into the shapefile, method to improve (it's too slow and produces huge files as outputs).

Some fixes on the parcel mode, Aurade dataset almost done, pixel and parcel mode do not produce the same results. Other various improvements.

Memory optimisation, improved speed and memory usage. Minor modifications in input preparation. Rain data is now scaled by 1000.

Bug correction and interface improvement in main samir code. Improved output plot scripts (some work left to do). Various small improvements.

Added parcel mode outputs, improved docs, improved samir parame tests, minor corrections and changes.

Further improvements in optimization. Manage to create real empty output dataset and append values along the time dimension, greatly improves total run speed. Reworked the custom_input notebook for a better handling of the land cover class conversion. Added tests on parameters values to make sure they are in correct range, parameter ranges are defined in a csv file (params_samir_min_max.csv). Other small modifications.

Some optimization improvements. Potential memory leaks to look at. Many improvements in the preprocessing scripts, almost finished the parcel mode. New scripts in the prostprocessing directory. Changes in the samir parameter handling.

Added more input preparation functions for parcel mode, started writing a global input preparation script. Reused script from modspa for config file.

Improved output plotting and added a script to automatically generate a daily GIF for a chosen variable.

Added main_run_samir.py to run the samir model. Modified config_file to manage input paths. Various bug corrections in dataset dimensions, speed improvements with parallel processing parameters. Added a notebook in postprocessing to plot pixel model outputs.