Changes in NDVI calculation scripts for faster preprocessing. Various improvements and code changes. Added json config file example.

Various improvements and bug corrections: fixed ndvi pixel clipping, adjusted memory requirement calculation, added one variable (footprint) for pixel GIF plotting. Other small changes.

Added THEIA and LandSat image download and management. Improved and simplified input preparation for parcel mode. Rewrote model calculation memory estimation function. Corrected small bugs.

Input preparation changes, 20m resolution now functional for SCIHUB. Updated some input and ouput scripts.

Some fixes on the parcel mode, Aurade dataset almost done, pixel and parcel mode do not produce the same results. Other various improvements.

Some optimization improvements. Potential memory leaks to look at. Many improvements in the preprocessing scripts, almost finished the parcel mode. New scripts in the prostprocessing directory. Changes in the samir parameter handling.

Added main_run_samir.py to run the samir model. Modified config_file to manage input paths. Various bug corrections in dataset dimensions, speed improvements with parallel processing parameters. Added a notebook in postprocessing to plot pixel model outputs.

Various modifications in preprocessing codes. Improved datachunking, corrected bugs in weather dataset download, small improvements in script speed. Added a notebook to help prepare landcover and soil data for pixel mode

Started working on modspa parcel mode. Rewrote pre-modspa functions for better integration to modspa pixel. Improved efficiency and simplicity at the same time.

Partially fixed input weather data handling. Found a way to convert tifs to netcdf. Modified functions accordingly. Sequential optimisation of code well advanced, will try multiprocessing after.

run_samir() operational. Outputs are not yet valid, updated dev_samir_xarray.ipynb for comparison with modspa excel and added validation inputs and outputs for comparison.

Modified input calculations. Reprojection of weather dataset needs to be handled differently for bigger images (with OTB for example). Modified the parameter class. Begining to work on samir time loop, inputs and parameters are done. Added env file. New method for calculating ET0 with xarray might have been found.

Calculation of ndvi cube and weather cube operational. Starting the samir params handling and time loop architecture