Bug correction in shapefile conversion, improved parcel output results. Pixel and Parcel results now match relatively well. Added a method to add output parcel data into the shapefile, method to improve (it's too slow and produces huge files as outputs).

Some fixes on the parcel mode, Aurade dataset almost done, pixel and parcel mode do not produce the same results. Other various improvements.

Memory optimisation, improved speed and memory usage. Minor modifications in input preparation. Rain data is now scaled by 1000.

Bug correction and interface improvement in main samir code. Improved output plot scripts (some work left to do). Various small improvements.

Added parcel mode outputs, improved docs, improved samir parame tests, minor corrections and changes.

Further improvements in optimization. Manage to create real empty output dataset and append values along the time dimension, greatly improves total run speed. Reworked the custom_input notebook for a better handling of the land cover class conversion. Added tests on parameters values to make sure they are in correct range, parameter ranges are defined in a csv file (params_samir_min_max.csv). Other small modifications.

Some optimization improvements. Potential memory leaks to look at. Many improvements in the preprocessing scripts, almost finished the parcel mode. New scripts in the prostprocessing directory. Changes in the samir parameter handling.

Added more input preparation functions for parcel mode, started writing a global input preparation script. Reused script from modspa for config file.

Improved output plotting and added a script to automatically generate a daily GIF for a chosen variable.

Added main_run_samir.py to run the samir model. Modified config_file to manage input paths. Various bug corrections in dataset dimensions, speed improvements with parallel processing parameters. Added a notebook in postprocessing to plot pixel model outputs.

Various modifications in preprocessing codes. Improved datachunking, corrected bugs in weather dataset download, small improvements in script speed. Added a notebook to help prepare landcover and soil data for pixel mode

Finished ndvi extraction scripts. Added parcel mode to weather scripts. Wrote script to convert dataframes into xarray datasets for parcel mode.

Started working on modspa parcel mode. Rewrote pre-modspa functions for better integration to modspa pixel. Improved efficiency and simplicity at the same time.

Partially fixed input weather data handling. Found a way to convert tifs to netcdf. Modified functions accordingly. Sequential optimisation of code well advanced, will try multiprocessing after.

optimised input reading and output writing, increased calculation speed by more than 10 on small datasets.