setup.rst.txt

Setting up the correct environnment and parameters
==================================================

This section will help you set-up the correct environnment and parameters to run the **modspa-pixel** scripts.

To begin, clone the project from the `github <https://gitlab.cesbio.omp.eu/auclairj/modspa-pixel>`_ page with the following command:

.. code:: bash

   (base) /modspa_pixel$ git clone https://gitlab.cesbio.omp.eu/auclairj/modspa-pixel.git
   
This should create a ``modspa_pixel`` directory in your current directory.

.. warning::

   Thz scripts have been developped and tested on **Linux** (Ubuntu) operating systems. Some tools or packages might not work on other operating systems like **Windows** or **Mac-OS**.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   conda_env
   json_config_file

.. note::

   A graphical interface to modify the ``json`` configuration file is planned for later versions.