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<li class="toctree-l1"><a class="reference internal" href="../setup/setup.html">Setting up the correct environnment and parameters</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Preparing the inputs for Modspa-Pixel</a><ul>
<li class="toctree-l2"><a class="reference internal" href="ndvi_cube.html">Preparing the NDVI data cube</a></li>
<li class="toctree-l2"><a class="reference internal" href="weather_cube.html">Preparing the weather data cube</a></li>
<li class="toctree-l2"><a class="reference internal" href="land_cover.html">Preparing the land cover raster</a></li>
<li class="toctree-l2"><a class="reference internal" href="soil_data.html">Preparing the soil data raster</a></li>
<li class="toctree-l2"><a class="reference internal" href="samir_params.html">Preparing the SAMIR parameter csv file</a></li>
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<li class="toctree-l1"><a class="reference internal" href="../samir/run_samir.html">Run the SAMIR model</a></li>
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<section id="preparing-the-inputs-for-modspa-pixel">
<h1>Preparing the inputs for Modspa-Pixel<a class="headerlink" href="#preparing-the-inputs-for-modspa-pixel" title="Link to this heading"></a></h1>
<p>The processing chain requires a lot of inputs to run. For the <strong>pixel mode</strong>, all the inputs have to be in the same projection and on the same grid to get correct results (this is detailed in each section). For the <strong>parcel mode</strong>, a <code class="docutils literal notranslate"><span class="pre">pandas</span> <span class="pre">DataFrame</span></code> is built by extracting and averaging input values on the parcel, for each date. This dataframe is then used to build a raster dataset that has the same global structure as an imput dataset for the <strong>pixel mode</strong>. Raw inputs are first downloaded (optical imagery, weather data, etc.) and then processed to get the inputs required for the <em>SAMIR</em> or <em>SAFY</em> models to run.</p>
<p>For large spatial windows or over long time windows, make sure to have enough disk space for all the input (<strong>raw</strong> and <strong>preprocessed</strong>).</p>
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<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
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<li class="toctree-l1"><a class="reference internal" href="ndvi_cube.html">Preparing the NDVI data cube</a></li>
<li class="toctree-l1"><a class="reference internal" href="weather_cube.html">Preparing the weather data cube</a></li>
<li class="toctree-l1"><a class="reference internal" href="land_cover.html">Preparing the land cover raster</a></li>
<li class="toctree-l1"><a class="reference internal" href="soil_data.html">Preparing the soil data raster</a></li>
<li class="toctree-l1"><a class="reference internal" href="samir_params.html">Preparing the SAMIR parameter csv file</a></li>
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<p class="admonition-title">Warning</p>
<p>parcel mode scripts are currently in development.</p>
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