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<li class="toctree-l1 current"><a class="current reference internal" href="#">Setting up the correct environnment and parameters</a><ul>
<li class="toctree-l2"><a class="reference internal" href="conda_env.html">Installing the conda environment</a></li>
<li class="toctree-l2"><a class="reference internal" href="json_config_file.html">Understanding the json config file</a></li>
<li class="toctree-l2"><a class="reference internal" href="eodag_config.html">Eodag configuration file</a></li>
<li class="toctree-l1"><a class="reference internal" href="../mode/mode.html">Choosing the run mode</a></li>
<li class="toctree-l1"><a class="reference internal" href="../preprocessing/input_preparation.html">Preparing the inputs for Modspa-Pixel</a></li>
<li class="toctree-l1"><a class="reference internal" href="../samir/run_samir.html">Run the SAMIR model</a></li>
<li class="toctree-l1"><a class="reference internal" href="../file_structure.html">Project file structure</a></li>
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  <section id="setting-up-the-correct-environnment-and-parameters">
<h1>Setting up the correct environnment and parameters<a class="headerlink" href="#setting-up-the-correct-environnment-and-parameters" title="Link to this heading"></a></h1>
<p>This section will help you set-up the correct environment and parameters to run the <strong>modspa_pixel</strong> scripts and perform a simulation.</p>
<p>To begin, clone the project from the <a class="reference external" href="https://gitlab.cesbio.omp.eu/auclairj/modspa_pixel">github</a> page with the following command:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>$<span class="w"> </span>git<span class="w"> </span>clone<span class="w"> </span>https://gitlab.cesbio.omp.eu/auclairj/modspa_pixel.git
</pre></div>
</div>
<p>This should create a <code class="docutils literal notranslate"><span class="pre">modspa_pixel</span></code> directory in your current directory.</p>
<div class="admonition warning">
<p class="admonition-title">Warning</p>
<p>The scripts have been developped and tested on <strong>Linux</strong> (Ubuntu) operating systems. Some tools or packages might not work on other operating systems like <strong>Windows</strong> or <strong>Mac-OS</strong>.</p>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="conda_env.html">Installing the conda environment</a></li>
<li class="toctree-l1"><a class="reference internal" href="json_config_file.html">Understanding the json config file</a></li>
<li class="toctree-l1"><a class="reference internal" href="eodag_config.html">Eodag configuration file</a></li>
<div class="admonition note">
<p class="admonition-title">Note</p>
<p>A graphical interface to modify the <code class="docutils literal notranslate"><span class="pre">json</span></code> configuration file is planned for later versions.</p>
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