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<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
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<li class="toctree-l1"><a class="reference internal" href="../setup/setup.html">Setting up the correct environnment and parameters</a></li>
<li class="toctree-l1 current"><a class="reference internal" href="input_preparation.html">Preparing the inputs for Modspa-Pixel</a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="ndvi_cube.html">Preparing the NDVI data cube</a></li>
<li class="toctree-l2"><a class="reference internal" href="weather_cube.html">Preparing the weather data cube</a></li>
<li class="toctree-l2"><a class="reference internal" href="land_cover.html">Preparing the land cover raster</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Preparing the soil data raster</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#soil-data-preprocessing">Soil data preprocessing</a></li>
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<li class="toctree-l2"><a class="reference internal" href="samir_params.html">Preparing the SAMIR parameter csv file</a></li>
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<li class="toctree-l1"><a class="reference internal" href="../samir/run_samir.html">Run the SAMIR model</a></li>
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<section id="preparing-the-soil-data-raster">
<h1>Preparing the soil data raster<a class="headerlink" href="#preparing-the-soil-data-raster" title="Link to this heading"></a></h1>
<p>The soil data (<strong>field capacity</strong> and <strong>wilting point</strong>) should be saved in a single <code class="docutils literal notranslate"><span class="pre">netCDF4</span></code> file with these two variable names : <code class="docutils literal notranslate"><span class="pre">Wfc</span></code> for <strong>field capacity</strong> and <code class="docutils literal notranslate"><span class="pre">Wwc</span></code> for <strong>wilting point</strong>. As for the <a class="reference internal" href="land_cover.html#land-cover"><span class="std std-ref">land cover</span></a>, you can reproject existing data using <code class="docutils literal notranslate"><span class="pre">OTB</span></code> for each variable and convert the resulting rasters using the following function:</p>
<div class="admonition warning">
<p class="admonition-title">Warning</p>
<p>Development in progress</p>
</div>
<p>If you only have scalar values for these parameters, you can also generate a uniform dataset using the following function:</p>
<div class="admonition warning">
<p class="admonition-title">Warning</p>
<p>Development in progress</p>
</div>
<p>You should then have a <code class="docutils literal notranslate"><span class="pre">netCDF4</span></code> dataset on the same grid as the other inputs containing both the <strong>field capacity</strong> and <strong>wilting point</strong> variables.</p>
<section id="soil-data-preprocessing">
<h2>Soil data preprocessing<a class="headerlink" href="#soil-data-preprocessing" title="Link to this heading"></a></h2>
<p>Soil data processing can be done with the <code class="docutils literal notranslate"><span class="pre">custom_inputs.ipynb</span></code> <strong>notebook</strong> found in the <code class="docutils literal notranslate"><span class="pre">modspa_pixel/preprocessing</span></code> directory. It can handle both the <strong>pixel</strong> and <strong>parcel</strong> mode.</p>
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