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<?xml version="1.0" encoding="UTF-8"?>
<?import javafx.scene.input.*?>
<?import java.lang.*?>
<?import javafx.geometry.*?>
<?import javafx.scene.control.*?>
<?import javafx.scene.image.*?>
<?import javafx.scene.layout.*?>
<?import javafx.scene.text.*?>
<?import javafx.geometry.Insets?>
<?import javafx.geometry.Rectangle2D?>
<?import javafx.scene.control.Accordion?>
<?import javafx.scene.control.Button?>
<?import javafx.scene.control.CheckBox?>
<?import javafx.scene.control.ColorPicker?>
<?import javafx.scene.control.ComboBox?>
<?import javafx.scene.control.Label?>
<?import javafx.scene.control.ListView?>
<?import javafx.scene.control.Menu?>
<?import javafx.scene.control.MenuBar?>
<?import javafx.scene.control.MenuButton?>
<?import javafx.scene.control.MenuItem?>
<?import javafx.scene.control.RadioButton?>
<?import javafx.scene.control.ScrollPane?>
<?import javafx.scene.control.Separator?>
<?import javafx.scene.control.Slider?>
<?import javafx.scene.control.Spinner?>
<?import javafx.scene.control.SpinnerValueFactory.IntegerSpinnerValueFactory?>
<?import javafx.scene.control.SplitPane?>
<?import javafx.scene.control.Tab?>
<?import javafx.scene.control.TabPane?>
<?import javafx.scene.control.TableColumn?>
<?import javafx.scene.control.TableView?>
<?import javafx.scene.control.TextArea?>
<?import javafx.scene.control.TextField?>
<?import javafx.scene.control.TitledPane?>
<?import javafx.scene.control.ToggleButton?>
<?import javafx.scene.control.Tooltip?>
<?import javafx.scene.image.Image?>
<?import javafx.scene.image.ImageView?>
<?import javafx.scene.layout.AnchorPane?>
<?import javafx.scene.layout.BorderPane?>
<?import javafx.scene.layout.ColumnConstraints?>
<?import javafx.scene.layout.GridPane?>
<?import javafx.scene.layout.HBox?>
<?import javafx.scene.layout.RowConstraints?>
<?import javafx.scene.layout.VBox?>
<?import javafx.scene.text.Font?>
<AnchorPane fx:id="anchorpaneRoot" maxHeight="1.7976931348623157E308" maxWidth="1.7976931348623157E308" prefHeight="708.0" prefWidth="1198.0" xmlns="http://javafx.com/javafx/8" xmlns:fx="http://javafx.com/fxml/1" fx:controller="fr.amap.lidar.amapvox.gui.MainFrameController">
<children>
<VBox AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0" AnchorPane.bottomAnchor="0.0" >
<children>
<MenuBar prefHeight="25.0" prefWidth="800.0" >
<menus>
<Menu mnemonicParsing="false" text="File">
<items>
<MenuItem mnemonicParsing="false" onAction="#onActionButtonAddTaskToListView" text="Open (Ctrl+O)">
<accelerator>
<KeyCodeCombination alt="UP" code="O" control="ANY" meta="UP" shift="UP" shortcut="UP" />
</accelerator>
</MenuItem>
<MenuItem mnemonicParsing="false" onAction="#onActionButtonSave" text="Save (Ctrl+S)">
<accelerator>
<KeyCodeCombination alt="UP" code="S" control="ANY" meta="UP" shift="UP" shortcut="UP" />
</accelerator>
</MenuItem>
<MenuItem mnemonicParsing="false" onAction="#onActionButtonExecute" text="Execute" />
</items>
</Menu>
<Menu mnemonicParsing="false" text="Edit">
<items>
<MenuItem fx:id="menuitemClearWindow" mnemonicParsing="false" onAction="#onActionMenuitemClearWindow" text="Clear window" />
</items>
</Menu>
<Menu mnemonicParsing="false" text="Help">
<items>
<MenuItem fx:id="menuItemUpdate" mnemonicParsing="false" onAction="#onActionMenuItemUpdate" text="Update" />
</items>
</Menu>
</menus>
</MenuBar>
<SplitPane fx:id="splitPaneVoxelization" dividerPositions="0.3" VBox.vgrow="ALWAYS" >
<items>
<AnchorPane>
<children>
<SplitPane dividerPositions="0.3" orientation="VERTICAL" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<items>
<AnchorPane>
<children>
<TitledPane animated="false" collapsible="false" text="Input (configuration) file(s)" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<AnchorPane>
<children>
<ListView fx:id="listViewTaskList" AnchorPane.bottomAnchor="30.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<tooltip>
<Tooltip text="List of imported configurations files." />
</tooltip>
</ListView>
<HBox spacing="10.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0">
<children>
<MenuButton mnemonicParsing="false" text="Selection">
<items>
<MenuItem mnemonicParsing="false" onAction="#onActionMenuItemTaskSelectionAll" text="All" />
<MenuItem mnemonicParsing="false" onAction="#onActionMenuItemTaskSelectionNone" text="None" />
</items>
</MenuButton>
<HBox spacing="5.0">
<children>
<Button mnemonicParsing="false" onAction="#onActionButtonRemoveTaskFromListView">
<graphic>
<ImageView fitHeight="15.0" fitWidth="15.0" pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/gnome_list_remove.png" />
</image>
</ImageView>
</graphic>
<tooltip>
<Tooltip text="Close the selected input (configuration) file(s)" />
</tooltip>
</Button>
<Button mnemonicParsing="false" onAction="#onActionButtonAddTaskToListView">
<graphic>
<ImageView fitHeight="15.0" fitWidth="15.0" pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/gnome_list_add.png" />
</image>
</ImageView>
</graphic>
<tooltip>
<Tooltip text="Import a configuration file." />
</tooltip>
</Button>
</children>
</HBox>
<HBox alignment="CENTER_LEFT" spacing="5.0">
<children>
<Button fx:id="buttonLoadSelectedTask" disable="true" mnemonicParsing="false" onAction="#onActionButtonLoadSelectedTask" text="Load">
<tooltip>
<Tooltip text="Load the selected task parameters into the frame" />
</tooltip>
</Button>
<Button fx:id="buttonExecute" disable="true" mnemonicParsing="false" onAction="#onActionButtonExecuteSelected" text="Execute">
<graphic>
<ImageView fitHeight="15.0" fitWidth="15.0" pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/start_2.png" />
</image>
</ImageView>
</graphic>
<tooltip>
<Tooltip text="Execute the selected input file(s)" />
</tooltip>
</Button>
</children>
</HBox>
</children>
</HBox>
</children>
</AnchorPane>
</content>
</TitledPane>
</children>
</AnchorPane>
<AnchorPane>
<children>
<TitledPane animated="false" collapsible="false" text="Output file(s)" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<AnchorPane>
<children>
<ListView fx:id="listViewProductsFiles" AnchorPane.bottomAnchor="30.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<tooltip>
<Tooltip text="List of exported files." />
</tooltip>
</ListView>
<HBox spacing="10.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0">
<children>
<MenuButton mnemonicParsing="false" text="Selection">
<items>
<MenuItem mnemonicParsing="false" onAction="#onActionMenuItemSelectionAll" text="All" />
<MenuItem mnemonicParsing="false" onAction="#onActionMenuItemSelectionNone" text="None" />
</items>
</MenuButton>
<HBox spacing="5.0">
<children>
<Button mnemonicParsing="false" onAction="#onActionButtonRemoveVoxelFileFromListView">
<graphic>
<ImageView fitHeight="15.0" fitWidth="15.0" pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/gnome_list_remove.png" />
</image>
</ImageView>
</graphic>
<tooltip>
<Tooltip text="Close the selected ouput file(s)" />
</tooltip>
</Button>
<Button mnemonicParsing="false" onAction="#onActionButtonAddVoxelFileToListView">
<graphic>
<ImageView fitHeight="15.0" fitWidth="15.0" pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/gnome_list_add.png" />
</image>
</ImageView>
</graphic>
<tooltip>
<Tooltip text="Add an output file" />
</tooltip>
</Button>
</children>
</HBox>
</children>
</HBox>
</children>
</AnchorPane>
</content>
</TitledPane>
</children>
</AnchorPane>
<AnchorPane>
<children>
<TitledPane animated="false" collapsible="false" contentDisplay="RIGHT" pickOnBounds="false" text="Logs" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<AnchorPane>
<children>
<TextArea fx:id="textAreaLog" editable="false" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0" />
</children>
<padding>
<Insets bottom="-1.0" left="-1.0" right="-1.0" top="-1.0" />
</padding>
</AnchorPane>
</content>
<graphic>
<HBox spacing="5.0">
<children>
<Button contentDisplay="CENTER" mnemonicParsing="false" onAction="#onActionButtonClearLog" text="Clear" />
<Button contentDisplay="CENTER" mnemonicParsing="false" onAction="#onActionButtonExportLog" text="Export" />
</children>
</HBox>
</graphic>
</TitledPane>
</children>
</AnchorPane>
</items>
</SplitPane>
</children>
</AnchorPane>
<AnchorPane>
<children>
<VBox AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0" AnchorPane.bottomAnchor="0.0" >
<children>
<ToolBar>
<items>
<Button fx:id="saveToolbarButton" mnemonicParsing="false" onAction="#onActionButtonSave">
<graphic>
<ImageView pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/toolbar/save-as.png" />
</image>
</ImageView>
</graphic>
<padding>
<Insets bottom="2.0" left="2.0" right="2.0" top="2.0" />
</padding>
<tooltip>
<Tooltip text="Save the current configuration (Ctrl+S)" />
</tooltip>
</Button>
<Button fx:id="executeToolbarButton" mnemonicParsing="false" onAction="#onActionButtonExecute">
<graphic>
<ImageView pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/toolbar/run-play.png" />
</image>
</ImageView>
</graphic>
<padding>
<Insets bottom="2.0" left="2.0" right="2.0" top="2.0" />
</padding>
<tooltip>
<Tooltip text="Execute current configuration(s)" />
</tooltip>
</Button>
</items>
</ToolBar>
<TabPane fx:id="tabPaneMain" tabClosingPolicy="UNAVAILABLE" VBox.vgrow="ALWAYS" >
<tabs>
<Tab fx:id="tabVoxelization" text="Voxelization">
<content>
<AnchorPane minHeight="0.0" minWidth="0.0" prefHeight="180.0" prefWidth="200.0">
<children>
<TabPane fx:id="tabPaneVoxelization" prefHeight="365.0" prefWidth="451.0" tabClosingPolicy="UNAVAILABLE" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<tabs>
<Tab fx:id="tabVoxelizationInput" text="Input">
<content>
<AnchorPane minHeight="0.0" minWidth="0.0" prefHeight="180.0" prefWidth="200.0">
<children>
<ScrollPane fitToWidth="true" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<VBox>
<children>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label text="Input mode" />
<ComboBox fx:id="inputModeComboBox" prefWidth="180.0" />
</children>
<padding>
<Insets left="15.0" top="15.0" bottom="15.0" />
</padding>
</HBox>
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<TitledPane fx:id="inputALSTitledPane" animated="false" expanded="false" text="ALS">
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<content>
<AnchorPane minHeight="0.0" minWidth="0.0">
<children>
<VBox spacing="15.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<ComboBox fx:id="comboboxModeALS" prefWidth="180.0" promptText="Choose mode..." />
<CheckBox fx:id="checkboxMultiFiles" mnemonicParsing="false" text="Multi-files" />
</children>
</HBox>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<VBox HBox.hgrow="ALWAYS" spacing="10.0">
<children>
<VBox>
<children>
<Label text="Input file(s)" />
<HBox>
<children>
<TextField fx:id="textFieldInputFileALS" prefHeight="25.0" prefWidth="280.0" HBox.hgrow="ALWAYS" />
<Button contentDisplay="CENTER" mnemonicParsing="false" onAction="#onActionButtonOpenInputFileALS" text="..." />
</children>
</HBox>
</children>
</VBox>
<VBox>
<children>
<Label text="Trajectory file" />
<HBox fx:id="hboxTrajectoryFile">
<children>
<TextField fx:id="textFieldTrajectoryFileALS" prefHeight="25.0" prefWidth="280.0" HBox.hgrow="ALWAYS" />
<Button fx:id="buttonOpenTrajectoryFileALS" mnemonicParsing="false" onAction="#onActionButtonOpenTrajectoryFileALS" text="..." />
</children>
</HBox>
</children>
</VBox>
</children>
</VBox>
<Button mnemonicParsing="false" onAction="#onActionButtonExportALSLidarShots" >
<graphic>
<ImageView fitHeight="24.0" fitWidth="24.0" pickOnBounds="true">
<image>
<Image url="@icons/lidar-shot.png" />
</image>
<viewport>
<Rectangle2D />
</viewport>
</ImageView>
</graphic>
<tooltip>
<Tooltip text="Compute lidar shots" />
</tooltip>
</Button>
</children>
</HBox>
<!--<Button mnemonicParsing="false" onAction="#onActionButtonGenerateShotsFile" prefHeight="26.0" prefWidth="146.0" text="Generate shots file" />-->
</children>
</VBox>
</children>
</AnchorPane>
</content>
</TitledPane>
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<TitledPane fx:id="inputTLSTitledPane" animated="false" expanded="false" text="TLS">
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<content>
<AnchorPane minHeight="0.0" minWidth="0.0">
<children>
<VBox spacing="15.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<ComboBox fx:id="comboboxModeTLS" prefWidth="180.0" promptText="Choose mode..." />
<VBox>
<children>
<Label text="Input file" />
<HBox spacing="10.0" alignment="CENTER_LEFT" >
<children>
<TextField fx:id="textFieldInputFileTLS" disable="true" editable="false" prefHeight="25.0" prefWidth="300.0" HBox.hgrow="ALWAYS" />
<Button mnemonicParsing="false" onAction="#onActionButtonOpenInputFileTLS" text="..." />
</children>
</HBox>
</children>
</VBox>
<VBox spacing="10.0">
<children>
<Label text="Imported scans:" />
<ListView fx:id="listviewRxpScans" prefHeight="150.0" prefWidth="300.0" disable="true" />
</children>
<padding>
<Insets left="20.0" />
</padding>
</VBox>
</children>
</VBox>
</children>
</AnchorPane>
</content>
</TitledPane>
</children>
</VBox>
</content>
</ScrollPane>
</children>
</AnchorPane>
</content>
</Tab>
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<Tab text="Output">
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<AnchorPane AnchorPane.rightAnchor="0.0">
<children>
<ScrollPane fitToWidth="true" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<VBox>
<children>
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<TitledPane fx:id="outputALSTitledPane" animated="false" expanded="false" text="ALS">
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<AnchorPane minHeight="0.0" minWidth="0.0">
<VBox spacing="15.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<VBox spacing="10.0">
<children>
<Label text="Output file/path" />
<HBox spacing="5.0">
<children>
<TextField fx:id="textFieldOutputFileALS" prefHeight="25.0" prefWidth="280.0" HBox.hgrow="ALWAYS" />
<Button mnemonicParsing="false" onAction="#onActionButtonOpenOutputFileALS" text="..." />
</children>
</HBox>
</children>
</VBox>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<HBox alignment="CENTER_LEFT" spacing="5.0">
<children>
<CheckBox fx:id="checkboxNaNsCorrection" mnemonicParsing="false" text="Correct NaNs" />
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<fx:include fx:id="helpButtonNaNsCorrection" source="HelpButton.fxml" />
</children>
</HBox>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label text="Threshold" />
<TextField fx:id="textfieldNaNsCorrectionThreshold" prefHeight="26.0" prefWidth="60.0" text="1" />
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</children>
</HBox>
</children>
</HBox>
<VBox spacing="10.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<HBox spacing="10.0">
<children>
<CheckBox fx:id="checkboxCalculateGroundEnergy" mnemonicParsing="false" text="Calculate ground energy" />
<fx:include fx:id="helpButtonGroundEnergy" source="HelpButton.fxml" />
</children>
</HBox>
<VBox fx:id="vboxGroundEnergy" spacing="10.0">
<children>
<HBox alignment="CENTER_LEFT" spacing="5.0">
<children>
<Label fx:id="labelOutputFileGroundEnergy" text="Output file" />
<TextField fx:id="textFieldOutputFileGroundEnergy" prefHeight="25.0" prefWidth="300" HBox.hgrow="ALWAYS" />
<Button mnemonicParsing="false" onAction="#onActionButtonOpenOutputFileGroundEnergy" text="..." />
<Label fx:id="labelGroundEnergyFormat" text="Format" />
<ComboBox fx:id="comboboxGroundEnergyOutputFormat" />
</children>
<padding>
<Insets left="25.0" />
</padding>
</HBox>
</children>
</VBox>
</children>
</VBox>
</children>
</VBox>
</AnchorPane>
</content>
</TitledPane>
<TitledPane fx:id="outputTLSTitledPane" animated="false" expanded="false" text="TLS">
<content>
<AnchorPane minHeight="0.0" minWidth="0.0">
<VBox spacing="15.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<VBox spacing="10.0">
<children>
<Label fx:id="labelTLSOutputPath" text="Output path" />
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<TextField fx:id="textFieldOutputPathTLS" prefHeight="25.0" prefWidth="300.0" HBox.hgrow="ALWAYS" />
<Button mnemonicParsing="false" onAction="#onActionButtonOpenOutputPathTLS" text="..." />
</children>
</HBox>
</children>
</VBox>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<CheckBox fx:id="checkboxMergeAfter" mnemonicParsing="false" selected="true" text="Merge voxel files" />
<TextField fx:id="textFieldMergedFileName" prefHeight="25.0" prefWidth="103.0" text="merged.vox" />
</children>
</HBox>
</children>
</VBox>
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</content>
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<TitledPane animated="false" expanded="false" text="Output format and precision">
<content>
<AnchorPane minHeight="0.0" minWidth="0.0">
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<HBox alignment="CENTER_LEFT" spacing="10.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<Label text="Voxel file format" wrapText="true" />
<ComboBox fx:id="comboboxVoxOutputFormat" promptText="Choose format" />
<fx:include fx:id="helpButtonOutputFormat" source="HelpButton.fxml" />
<Label text="Fraction digits:" />
<Spinner fx:id="spinnerFractionDigits" prefWidth="72.0" BorderPane.alignment="CENTER" />
<fx:include fx:id="helpButtonFractionDigits" source="HelpButton.fxml" />
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</HBox>
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</AnchorPane>
</content>
</TitledPane>
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<TitledPane animated="false" expanded="false" text="Exported output variables">
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<AnchorPane minHeight="0.0" minWidth="0.0">
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<VBox spacing="10.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
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<HBox spacing="10.0">
<children>
<Label prefHeight="23.0" text="Selected which variables will be exported" wrapText="true" />
<fx:include fx:id="helpButtonOutputVariables" source="HelpButton.fxml" />
</children>
</HBox>
<HBox spacing="10.0">
<children>
<VBox spacing="10.0">
<children>
<CheckBox fx:id="bsInterceptedBox" mnemonicParsing="false" selected="true" text="Intercepted beam surface">
<tooltip>
<Tooltip text="Unit: metre^2, description: Cumulated ray beam surface intercepted inside a voxel. " />
</tooltip>
</CheckBox>
<CheckBox fx:id="bsEnteringBox" mnemonicParsing="false" selected="true" text="Entering beam surface">
<tooltip>
<Tooltip text="Unit: metre^2, description: Cumulated ray beam surface entering a voxel. " />
</tooltip>
</CheckBox>
<CheckBox fx:id="angleMeanBox" mnemonicParsing="false" selected="true" text="Mean ray angle">
<tooltip>
<Tooltip text="Unit: degree, Description: Mean zenithal angle. Zenithal angle defined as angle between zenith (origin at the ground) and shot direction." />
</tooltip>
</CheckBox>
<CheckBox fx:id="padbvTotalBox" disable="true" mnemonicParsing="false" selected="true" text="Plant area density ">
<tooltip>
<Tooltip text="(Exported by default)" />
</tooltip>
</CheckBox>
</children>
</VBox>
<VBox spacing="10.0">
<children>
<CheckBox fx:id="nbEchoesBox" mnemonicParsing="false" selected="true" text="Number of echoes">
<tooltip>
<Tooltip text="Unit: scalar, description: Number of echoes inside a voxel. " />
</tooltip>
</CheckBox>
<CheckBox fx:id="lgTotalBox" mnemonicParsing="false" selected="true" text="Cumulated ray length">
<tooltip>
<Tooltip text="Unit: metre, description: Sum of ray length inside a voxel." />
</tooltip>
</CheckBox>
<CheckBox fx:id="lMeanTotalBox" mnemonicParsing="false" selected="true" text="Mean ray length">
<tooltip>
<Tooltip text="Unit: metre, description: Cumulated ray length weighted by number or rays" />
</tooltip>
</CheckBox>
<CheckBox fx:id="groundDistanceBox" mnemonicParsing="false" selected="true" text="Ground distance">
<tooltip>
<Tooltip text="Unit: metre, description: distance from voxel centre to ground level." />
</tooltip>
</CheckBox>
</children>
</VBox>
<VBox spacing="10.0">
<children>
<CheckBox fx:id="bsPotentialBox" mnemonicParsing="false" selected="true" text="Potential beam surface">
<tooltip>
<Tooltip text="Unit: metre^2, description: Cumulated ray beam surface going through a voxel free of any vegetation." />
</tooltip>
</CheckBox>
<CheckBox fx:id="transmittanceBox" mnemonicParsing="false" selected="true" text="Estimated transmittance">
<tooltip>
<Tooltip text="Unit: ?, description: Numerical estimation of the transmittance. Refer to user guide for computational details." />
</tooltip>
</CheckBox>
<CheckBox fx:id="nbSamplingBox" mnemonicParsing="false" selected="true" text="Number of rays">
<tooltip>
<Tooltip text="Unit: scalar, description: Number of rays entering a voxel. " />
</tooltip>
</CheckBox>
<CheckBox fx:id="distLaserBox" mnemonicParsing="false" selected="false" text="Mean distance to laser">
<tooltip>
<Tooltip text="Unit: metre, description: the mean distance of voxel centre to shot origin." />
</tooltip>
</CheckBox>
</children>
</VBox>
<VBox spacing="10.0">
<children>
<CheckBox fx:id="sdLengthBox" mnemonicParsing="false" selected="false" text="Ray length SD">
<tooltip>
<Tooltip text="Unit: square metre, description: ray length standard deviation." />
</tooltip>
</CheckBox>
<CheckBox fx:id="attenuationBox" mnemonicParsing="false" selected="true" text="Attenuation coefficient">
<tooltip>
<Tooltip text="Unit: dimensionless, description: estimator of the attenuation coefficient." />
</tooltip>
</CheckBox>
<CheckBox fx:id="explorationBox" mnemonicParsing="false" selected="false" text="Exploration rate">
<tooltip>
<Tooltip text="Unit: dimensionless, description: sampling intensity at subvoxel scale." />
</tooltip>
</CheckBox>
</children>
</VBox>
</children>
<padding>
<Insets left="25.0" />
</padding>
</HBox>
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</VBox>
</children>
</AnchorPane>
</content>
</TitledPane>
<TitledPane animated="false" expanded="false" text="Plant Area Density">
<content>
<AnchorPane>
<children>
<VBox spacing="10.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
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<HBox alignment="CENTER_LEFT" prefHeight="26.0" prefWidth="293.0" spacing="5.0">
<children>
<Label text="PAD max" />
<TextField fx:id="textFieldPADMax" prefHeight="25.0" prefWidth="72.0" text="5" />
<MenuButton fx:id="menuButtonAdvisablePADMaxValues" mnemonicParsing="false" prefHeight="26.0" prefWidth="146.0" text="Advised value" />
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</HBox>
<Button mnemonicParsing="false" onAction="#onActionButtonResetPadLimitsToDefault" text="Reset to default" />
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</VBox>
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</AnchorPane>
</content>
</TitledPane>
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<TitledPane animated="false" expanded="false" text="Estimated transmittance">
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<AnchorPane minHeight="0.0" minWidth="0.0">
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<VBox spacing="10.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label text="Estimated transmittance parameters" />
<fx:include fx:id="helpButtonTrNumEstim" source="HelpButton.fxml" />
</children>
</HBox>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label text="Error (10^-n)" />
<Spinner fx:id="spinnerTrNumError" prefWidth="72.0" BorderPane.alignment="CENTER" />
<fx:include fx:id="helpButtonTrNumError" source="HelpButton.fxml" />
</children>
<padding>
<Insets left="25.0" />
</padding>
</HBox>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label text="Fallback error (10^-n)" />
<Spinner fx:id="spinnerTrNumFallbackError" prefWidth="72.0" BorderPane.alignment="CENTER" />
<fx:include fx:id="helpButtonTrNumFallbackError" source="HelpButton.fxml" />
</children>
<padding>
<Insets left="25.0" />
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<HBox alignment="CENTER_LEFT" spacing="10.0">
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<Label text="Fallback mode trigger" />
<TextField fx:id="textFieldTrNumNRecordMax" disable="true" prefHeight="25.0" prefWidth="72.0" text="0" />
<fx:include fx:id="helpButtonTrNumNRecordMax" source="HelpButton.fxml" />
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</AnchorPane>
</content>
</TitledPane>
</children>
</VBox>
</content>
</ScrollPane>
</children>
</AnchorPane>
</content>
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<tooltip>
<Tooltip text="Change outputs variables parameters." />
</tooltip>
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</Tab>
<Tab text="Transformation">
<content>
<AnchorPane minHeight="0.0" minWidth="0.0" prefHeight="180.0" prefWidth="200.0">
<children>
<ScrollPane fitToWidth="true" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<TitledPane animated="false" collapsible="false" text="Transformation matrix">
<content>
<AnchorPane minHeight="0.0" minWidth="0.0">
<children>
<VBox spacing="5.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<children>
<HBox spacing="5.0">
<children>
<VBox spacing="5.0">
<children>
<TextField fx:id="labelM00" promptText="m00" />
<TextField fx:id="labelM10" promptText="m10" />
<TextField fx:id="labelM20" promptText="m20" />
<TextField fx:id="labelM30" promptText="m30" />
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</VBox>
<VBox spacing="5.0">
<children>
<TextField fx:id="labelM01" promptText="m01" />
<TextField fx:id="labelM11" promptText="m11" />
<TextField fx:id="labelM21" promptText="m21" />
<TextField fx:id="labelM31" promptText="m31" />
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<VBox spacing="5.0">
<children>
<TextField fx:id="labelM02" promptText="m02" />
<TextField fx:id="labelM12" promptText="m12" />
<TextField fx:id="labelM22" promptText="m22" />
<TextField fx:id="labelM32" promptText="m32" />
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</VBox>
<VBox spacing="5.0">
<children>
<TextField fx:id="labelM03" promptText="m03" />
<TextField fx:id="labelM13" promptText="m13" />
<TextField fx:id="labelM23" promptText="m23" />
<TextField fx:id="labelM33" promptText="m33" />
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</VBox>
</children>
</HBox>
<Button mnemonicParsing="false" onAction="#onActionButtonResetToIdentity" text="Clear transformation" />
<GridPane hgap="5.0">
<columnConstraints>
<ColumnConstraints hgrow="NEVER" prefWidth="150" />
<ColumnConstraints hgrow="NEVER" prefWidth="120" />
<ColumnConstraints hgrow="NEVER" prefWidth="25" />
<ColumnConstraints hgrow="NEVER" prefWidth="150" />
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<rowConstraints>
<RowConstraints minHeight="10.0" vgrow="SOMETIMES" />
<RowConstraints minHeight="10.0" prefHeight="30.0" vgrow="SOMETIMES" />
<RowConstraints minHeight="10.0" prefHeight="30.0" vgrow="SOMETIMES" />
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<children>
<Button fx:id="buttonOpenPopMatrixFile" disable="true" mnemonicParsing="false" onAction="#onActionButtonOpenPopMatrixFile" text="Open file" GridPane.columnIndex="3">
<tooltip>
<Tooltip text="Matrix file or Rsp file allowed" />
</tooltip>
</Button>
<CheckBox fx:id="checkboxUsePopMatrix" disable="true" mnemonicParsing="false" onAction="#onActionCheckboxUsePopMatrix" selected="true" text="Use POP matrix">
<tooltip>
<Tooltip text="Project Orientation and Position matrix" />
</tooltip>
</CheckBox>
<CheckBox fx:id="checkboxUseSopMatrix" disable="true" mnemonicParsing="false" onAction="#onActionCheckboxUseSopMatrix" selected="true" text="Use SOP matrix" GridPane.rowIndex="1">
<tooltip>
<Tooltip text="System Orientation and Position matrix" />
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<CheckBox fx:id="checkboxUseVopMatrix" mnemonicParsing="false" onAction="#onActionCheckboxUseVopMatrix" text="Use VOP matrix" GridPane.rowIndex="2">
<tooltip>
<Tooltip text="Voxel Orientation and Position matrix" />
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<CheckBox fx:id="checkBoxUseDefaultSopMatrix" disable="true" mnemonicParsing="false" selected="true" text="Use default" GridPane.columnIndex="1" GridPane.rowIndex="1" />
<CheckBox fx:id="checkBoxUseDefaultPopMatrix" disable="true" mnemonicParsing="false" selected="true" text="Use default" GridPane.columnIndex="1" />
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<Button fx:id="buttonOpenSopMatrixFile" disable="true" mnemonicParsing="false" onAction="#onActionButtonOpenSopMatrixFile" text="Open file" GridPane.columnIndex="3" GridPane.rowIndex="1">
<tooltip>
<Tooltip text="Matrix file or Rsp file allowed" />
</tooltip>
</Button>
<Label alignment="BOTTOM_CENTER" text="or" GridPane.columnIndex="2" GridPane.rowIndex="1" />
<Button fx:id="buttonSetVOPMatrix" disable="true" mnemonicParsing="false" onAction="#onActionButtonSetVOPMatrix" GridPane.columnIndex="1" GridPane.rowIndex="2">
<graphic>
<ImageView fitHeight="20.0" fitWidth="20.0" pickOnBounds="true" preserveRatio="true">
<image>
<Image url="@icons/Interaction_Transformation.png" />
</image>
</ImageView>
</graphic>
</Button>
</children>
<padding>
<Insets bottom="5.0" left="5.0" right="5.0" top="5.0" />
</padding>
</GridPane>
</children>
</VBox>
</children>
</AnchorPane>
</content>
</TitledPane>
</content>
</ScrollPane>
</children>
</AnchorPane>
</content>
</Tab>
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<Tab text="Voxel space">
<content>
<AnchorPane minHeight="0.0" minWidth="0.0" prefHeight="180.0" prefWidth="200.0">
<children>
<ScrollPane fitToWidth="true" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<VBox>
<children>
<TitledPane animated="false" collapsible="false" text="Resolution">
<content>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label text="Voxel size (m)" />
<TextField fx:id="textFieldResolution" prefHeight="25.0" prefWidth="70.0" text="1" />
</children>
<padding>
<Insets left="10.0" top="10.0" bottom="10.0" />
</padding>
</HBox>
</content>
</TitledPane>
<TitledPane animated="false" collapsible="false" text="Bounding box">
<content>
<VBox spacing="10.0" >
<children>
<HBox fx:id="hboxAutomaticBBox" alignment="CENTER_LEFT" spacing="5.0">
<children>
<MenuButton mnemonicParsing="false" text="Automatic">
<items>
<MenuItem mnemonicParsing="false" onAction="#onActionButtonAutomatic" text="Fast" />
<MenuItem mnemonicParsing="false" onAction="#onActionButtonAutomaticDeepSearch" text="Deep search" />
</items>
</MenuButton>
<fx:include fx:id="helpButtonAutoBBox" source="HelpButton.fxml" />
</children>
</HBox>
<AnchorPane fx:id="anchorpaneBoundingBoxParameters">
<children>
<fx:include fx:id="voxelSpacePanelVoxelization" source="VoxelSpacePanel.fxml" />
</children>
</AnchorPane>
</children>
</VBox>
</content>
</TitledPane>
<TitledPane animated="false" collapsible="false" text="Sub voxel space">
<content>
<HBox spacing="10" alignment="CENTER_LEFT" >
<children>
<Label text="Sub voxel division"></Label>
<TextField fx:id="textFieldSubVoxel" prefWidth="50.0" text="2" />
<fx:include fx:id="helpButtonSubVoxel" source="HelpButton.fxml" />
</children>
<padding>
<Insets left="10.0" top="10.0" bottom="10.0" />
</padding>
</HBox>
</content>
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</VBox>
</content>
</ScrollPane>
</children>
</AnchorPane>
</content>
</Tab>
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<Tab text="Filters">
<content>
<AnchorPane>
<children>
<ScrollPane fitToWidth="true" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
<content>
<VBox>
<children>
<TitledPane animated="false" text="Digital Terrain Model">
<content>
<AnchorPane>
<children>
<VBox spacing="15.0" AnchorPane.bottomAnchor="10.0" AnchorPane.leftAnchor="10.0" AnchorPane.rightAnchor="10.0" AnchorPane.topAnchor="10.0">
<children>
<CheckBox fx:id="checkboxUseDTMFilter" mnemonicParsing="false" onAction="#onActionCheckboxUseDTMFilter" text="DTM filter" />
<VBox spacing="15.0">
<children>
<VBox spacing="10.0">
<children>
<Label fx:id="labelDTMPath" disable="true" text="DTM path (.asc)" />
<HBox>
<children>
<TextField fx:id="textfieldDTMPath" disable="true" editable="false" HBox.hgrow="ALWAYS" />
<Button fx:id="buttonOpenDTMFile" disable="true" mnemonicParsing="false" onAction="#onActionButtonOpenDTMFile" text="..." />
</children>
</HBox>
</children>
</VBox>
<HBox alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label fx:id="labelDTMValue" disable="true" text="Offset (distance above ground)" />
<TextField fx:id="textfieldDTMValue" disable="true" prefHeight="25.0" prefWidth="55.0" text="1" />
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</HBox>
<CheckBox fx:id="checkboxApplyVOPMatrix" disable="true" mnemonicParsing="false" selected="true" text="Apply VOP matrix" />
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<padding>
<Insets left="25.0" />
</padding>
</VBox>
</children>
</VBox>
</children>
</AnchorPane>
</content>
</TitledPane>
<TitledPane animated="false" expanded="false" text="Shots">
<content>
<AnchorPane>
<children>
<VBox spacing="15.0" AnchorPane.bottomAnchor="10" AnchorPane.leftAnchor="10" AnchorPane.rightAnchor="10" AnchorPane.topAnchor="10">
<children>
<HBox spacing="10.0">
<children>
<CheckBox fx:id="checkboxShotDecimation" contentDisplay="RIGHT" mnemonicParsing="false" text="Shot decimation" />
<fx:include fx:id="buttonHelpShotDecimation" source="HelpButton.fxml" />
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</HBox>
<HBox fx:id="hBoxShotDecimation" alignment="CENTER_LEFT" spacing="10.0">
<children>
<Label text="Decimation factor" />
<TextField fx:id="textfieldDecimationFactor" prefHeight="26.0" prefWidth="60.0" text="10" />
</children>
<padding>
<Insets left="25.0" />
</padding>
</HBox>
<VBox spacing="10.0">
<children>
<HBox spacing="10.0">
<children>
<CheckBox fx:id="checkboxShotConsistency" contentDisplay="RIGHT" disable="false" mnemonicParsing="false" selected="true" text="Discard inconsistent shots" />
<fx:include fx:id="buttonHelpShotConsistency" source="HelpButton.fxml" />
</children>
</HBox>
<VBox spacing="10.0">
<children>
<CheckBox contentDisplay="RIGHT" disable="true" mnemonicParsing="false" selected="true" text="Discard shots with any interlaid blank echo" />
<CheckBox contentDisplay="RIGHT" disable="true" mnemonicParsing="false" selected="true" text="Discard shots with echo distances not monotically increasing" />
<CheckBox fx:id="checkboxBlankEchoDiscarded" contentDisplay="RIGHT" disable="false" mnemonicParsing="false" selected="false" text="Discard shots with any blank echo" />
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<HBox spacing="10.0">
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