run_nemo.md

@@ -107,6 +107,7 @@ User needs the mesh mask file for preprocessing inputs. It contains all geograph
 ---
 1. Prepare analytical run 
 
+
 _prerequisites_ :
 
    Check if specific cpp key are disabled , go to the cpp file and remove key_top key 
@@ -125,18 +126,40 @@ _prerequisites_ :
  
 > **Note** : Save your namelist_cfg file with another name (it will be use later) and just modify these key on your namelist_cfg file
 
-_modification of includefile_ :
+
+_modification of includefile and EXP00_ :
+
+   
+   ```console
+   cd $P_CTL_DIR/../../${CONFIG}-${CASE}-analytic/EXP00/
+   cp -f $P_CTL_DIR/{run_nemo.ksh,namelist_cfg,includefile.ini} .
+   ```
 
    In order to have small simulation (larger than the model time step could be better ....), in days unit, for instance, put : 
    ```
+   MAXSUB=1
      DAYS=2
+   CONFIG_CASE=${CONFIG}-${CASE}-analytic
+   ``` 
+
+   ```console
+   set -a
+   . ${WRKDIR}/NEMO_CONFIGS/setup/TATL025BIO/conf/includefile.ini
+   set +a
+   ```
+
+   ```console
+   touch ${CONFIG}-${CASE}-analytic.db
+   echo "1 1 108 " >> ${CONFIG}-${CASE}-analytic.db
    ```
    
+
 _modification of namelist_cfg file_ :
 
 
    first look on includefileini the JPNI and JPNJ variable ($JPNI*$JPNJ=$NOCEAN) for non-optimization use, you need to turn off the optimized MPI tiles parameters, put on section &nammpp :
 
+
    ```  
    jpni        =   $JPNI 
    jpnj        =   $JPNJ
@@ -165,7 +188,7 @@ _modification of namelist_cfg file_ :
 2. Launch job
 
    ```
-   $BATCH_CMD run_nemo.ksh 
+   ccc_msub run_nemo.ksh 
    ```
 ---
 3. Look on your scratch the rundir path ($NOCEAN : number of procs for nemo) for the 1st simulation (X=1)