Introduction.md

@@ -75,7 +75,7 @@ git config --global user.name "Robert"
 git config --global user.email "Robert@domain.fr"
 ```
 
-Prepare your environment, for each configurations go to see tab and instructions in details [Configurations](https://git.outils-is.ird.fr/legos_atnum/repos2/nemo_cfgs/setup/wikis/Configurations):
+Prepare your environment, for each configurations go to see tab and instructions in details [Configurations](https://git.outils-is.ird.fr/legos_atnum/repos2/nemo_cfgs/wikis/Configurations):
 
 ```
 WRKDIR=$(pwd)
@@ -113,7 +113,7 @@ master
 
 Then create new nemo directory...:
 ``` 
-mv -f ${WRKDIR}/NEMO_CFGS/models/NEMO/* ${WRKDIR}/NEMOREF/dev_rXXXX_config_legos/. 
+rsync -av ${WRKDIR}/NEMO_CFGS/models/NEMO/* ${WRKDIR}/NEMOREF/dev_rXXXX_config_legos/.
 mv ${WRKDIR}/NEMOREF/dev_rXXXX_config_legos/ ${WRKDIR}/NEMO_CFGS/models/NEMO/.
 ```
 
@@ -181,10 +181,9 @@ If you are not friendly with the repos, the user can proceed in this way to sear
 
 ###### NEMO_CFGS directory
 
-All these files are versioned for a configuration given here _CONFIG_CASE_
-There are 2 repos **NEMO/** and **setup/**:
+All these files are versioned for a configuration given here _CONFIG_CASE_:
 
-1. NEMO : Fichiers Sources, contributions LEGOS+depot officiel sous
+1. models/NEMO : Fichiers Sources, contributions LEGOS+depot officiel sous
 NEMO, ainsi que tools contenant les outils NEMO de preprocessing
  
  *     NEMO_CFGS/models/NEMO/dev_rXXXX_config_legos/cfgs/CONFIG_CASE/MY_SRC/(*.F90)
@@ -198,7 +197,7 @@ NEMO, ainsi que tools contenant les outils NEMO de preprocessing
 > **Note** : On garde cette arborescence , on pourrait imaginer des
    modifications de sources sur d'autres modèles tel WRF (pas les sources officiels) pour certaine
    config couplé avec NEMO par exemple. On aura:
-   NEMO_CFGS/models/WRFSRC/...   voir NEMO_CFGS/models/SDAP en mirroir... 
+   NEMO_CFGS/models/WRFSRC/...   voir NEMO_CFGS/models/SDAP en mirroir... voire new repo SDAP ?
 
 2. setup : fichier de conf includefile.ini contenant l'ensemble des
 variables d'environnement correspondant a la config CONFIG_CASE ainsi
@@ -246,13 +245,13 @@ Les scripts et outils
 #### Listing
 
 
-[Configurations](https://git.outils-is.ird.fr/legos_atnum/repos/nemo_cfgs/setup/wikis/Configurations) are stored since December 2019. The table below shows the different characteristics of these. In the dedicated section, the configurations are explained, including the inputs used and the procedure to follow for the recovery of the repository and tools with their proper revision.
+[Configurations](https://git.outils-is.ird.fr/legos_atnum/repos2/nemo_cfgs/wikis/Configurations) are stored since December 2019. The table below shows the different characteristics of these. In the dedicated section, the configurations are explained, including the inputs used and the procedure to follow for the recovery of the repository and tools with their proper revision.
 
 
 
 | Configurations | Name | Model | Res. | Lat<br>Lon</br> | ix<br>iy</br><br>iz</br> | Type | Tests on | Cluster | Cpus<br>/model</br> | Time elapse<br>/yr</br> |
 |:-:|:-:|:-:|:-:|:-:|:-:|:-:|:-:|:-:|:-:|:-:|
-| <span style='color:red'>[<span style='color:red'>TATL025BIO</span>](https://git.outils-is.ird.fr/legos_atnum/repos/nemo_cfgs/setup/wikis/Configurations/TATL025BIO)</span> | Tropical Atlantic | NEMO4.0.1 (rev.11837)<br>PISCESv2</br><br>XIOS2.5 (rev.1646)</br> | 0.25° | [-34,05;34,46N]<br>[-99;20E]</br> | 477<br>293</br><br>75</br> | Forced | 1993 <br>to 1997</br> | Irene (TGCC-cea) | 138<br>6</br> | 4h00
+| <span style='color:red'>[<span style='color:red'>TATL025BIO</span>](https://git.outils-is.ird.fr/legos_atnum/repos2/nemo_cfgs/wikis/Configurations/TATL025BIO)</span> | Tropical Atlantic | NEMO4.0.1 (rev.11837)<br>PISCESv2</br><br>XIOS2.5 (rev.1646)</br> | 0.25° | [-34,05;34,46N]<br>[-99;20E]</br> | 477<br>293</br><br>75</br> | Forced | 1993 <br>to 1997</br> | Irene (TGCC-cea) | 138<br>6</br> | 4h00
 | To be continued ... | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓