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Jeremy Auclair authoredJeremy Auclair authored
file_structure.html 7.00 KiB
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<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
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<li class="toctree-l1"><a class="reference internal" href="setup/setup.html">Setting up the correct environnment and parameters</a></li>
<li class="toctree-l1"><a class="reference internal" href="inputs/input_preparation.html">Preparing the inputs for Modspa-Pixel</a></li>
<li class="toctree-l1"><a class="reference internal" href="samir/run_samir.html">Run the SAMIR model</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Project file structure</a></li>
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<section id="project-file-structure">
<h1>Project file structure<a class="headerlink" href="#project-file-structure" title="Link to this heading"></a></h1>
<p>Here is an outlay of the current file strucutre:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>├── dl_S2.csv
├── __init__.py
├── parameters
│ ├── __init__.py
│ ├── csv_files
│ │ └── params_samir_test.csv
│ └── params_samir_class.py
├── DEV_inputs_test
│ ├── soil_100.nc
│ ├── ndvi_100.nc
│ ├── soil_1000.nc
│ ├── ndvi_10.nc
│ ├── xls_NDVI_10.nc
│ ├── xls_NDVI_100.nc
│ ├── soil_10.nc
│ ├── ndvi_1000.nc
│ ├── land_cover_100.nc
│ ├── xls_weather_10.nc
│ ├── pix_outputs_10.nc
│ ├── land_cover_10.nc
│ ├── xls_outputs_100.nc
│ ├── xls_outputs_10.nc
│ ├── xls_weather_1000.nc
│ ├── xls_weather_100.nc
│ ├── land_cover_1000.nc
│ └── xls_NDVI_1000.nc
├── test_samir_dask.py
├── tests.py
├── modspa_pixel_env.yml
├── source
│ ├── code_toolbox.py
│ └── modspa_samir.py
├── SAMIR_xls
│ ├── SAMIRv5_juin2015.xlsx
│ └── SAMIRpixel_Reference_Simonneaux2012.xls
├── test_S2_one_tile.csv
├── config
│ ├── config.py
│ └── config_modspa.json
├── dev_samir_xarray.ipynb
├── preprocessing
│ ├── download_S2.py
│ ├── parcel_to_pixel.py
│ ├── lib_era5_land_pixel.py
│ ├── calculate_ndvi.py
│ ├── input_toolbox.py
│ └── download_ERA5_weather.py
├── test_samir.py
├── README.md
├── postprocessing
└── docs
├── source
│ ├── inputs
│ │ ├── samir_params.rst
│ │ ├── weather_cube.rst
│ │ ├── land_cover.rst
│ │ ├── ndvi_cube.rst
│ │ ├── input_preparation.rst
│ │ └── soil_data.rst
│ ├── conf.py
│ ├── file_structure.rst │ ├── .templates
│ ├── filetree.rst
│ ├── samir
│ │ ├── data_and_ram_management.rst
│ │ ├── samir_functions.rst
│ │ └── run_samir.rst
│ ├── index.rst
│ ├── .static
│ └── setup
│ ├── json_config_file.rst
│ ├── conda_env.rst
│ └── setup.rst
├── build
└── Makefile
</pre></div>
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