diff --git a/tsg_util/readBucketData.m b/tsg_util/readBucketData.m
deleted file mode 100644
index d5091070e58fba33f8e4b7de5561fcd83e7a89e2..0000000000000000000000000000000000000000
--- a/tsg_util/readBucketData.m
+++ /dev/null
@@ -1,70 +0,0 @@
-function [error] = readBucketData( hTsgGUI, filename)
-% Function to read Bucket data in ASCII format.
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% @The data are store using setappdata - Variable name : 'bucketASCII'
-%
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Open the file
-% -------------
-fid = fopen( filename, 'r' );
-
-error = -1;
-if fid ~= -1
-
- % Get the tsg structure from application GUI
- % ------------------------------------------
- tsg = getappdata( hTsgGUI, 'tsg_data');
-
- % Read the file - skip 2 lines
- % ----------------------------
- fgetl( fid ); fgetl( fid );
- bucketData = fscanf(fid,'%d %d %d %d %d %d %f %f %f', [9 Inf])';
-
- % Every variable are put in a structure
- % -------------------------------------
- tsg.DAYD_WS = datenum(bucketData(:,1), bucketData(:,2), ...
- bucketData(:,3), bucketData(:,4), ...
- bucketData(:,5), bucketData(:,6));
-
- % save original date
- % ------------------
- tsg.DATE_WS = datestr( tsg.DAYD_WS, 'yyyymmddHHMMSS' );
-
- tsg.LATX_WS = bucketData(:,7);
- tsg.LONX_WS = bucketData(:,8);
- tsg.SSPS_WS = bucketData(:,9);
- tsg.SSPS_WS_QC = zeros(size(tsg.SSPS_WS));
-
- %@ completer ces 2 champs !!!!!!!!
- %tsg.PSAL_WS_ANALDATE = ;
- %tsg.PSAL_WS_BOTTLE = ;
- % remplace pour l'instant sample.TYPE !!!!!!
- %tsg.SSPS_WS_TYPE = ones(size(tsg.SSPS_WS));
-
- % Save the data in the application GUI
- % ------------------------------------
- setappdata( hTsgGUI, 'tsg_data', tsg );
-
- % Clear the Workspace
- % -------------------
- clear bucketData
-
- % Close the file
- % --------------
- fclose( fid );
-
- % Everything OK
- % -------------
- error = 1;
-end
diff --git a/tsg_util/readTsgDataNetCDF.m b/tsg_util/readTsgDataNetCDF.m
deleted file mode 100644
index 475fbdc6f8dd2798da32a8df40f1c34e1e16cc37..0000000000000000000000000000000000000000
--- a/tsg_util/readTsgDataNetCDF.m
+++ /dev/null
@@ -1,187 +0,0 @@
-function [error] = readTsgDataNetCDF( hTsgGUI, filename)
-% Function to read the TSG data. Should be a NetCDF file
-% GOSUD data format TSG V1.4
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% $Id$
-
-% Get the data from the application GUI
-% -------------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Display read file info on console
-% ---------------------------------
-fprintf('\nREAD_NETCDF_FILE\n'); tic;
-
-% Open netCDF file
-% ----------------
-nc = netcdf(filename,'read');
-if isempty(nc)
- msg_error = ['TSG_GOSUD file_lecture : Open file error : ' filename];
- warndlg( msg_error, 'NetCDF error dialog');
- sprintf('...cannot locate %s\n', filename);
- error = -1;
- return;
-end
-
-% Display more info about read file on console
-% --------------------------------------------
-fprintf('...reading %s : ', filename);
-
-% Read global attributes: meta data
-% ----------------------------------
-
-tsg.PLATFORM_NAME = nc.PLATFORM_NAME(:);
-tsg.SHIP_CALL_SIGN = nc.SHIP_CALL_SIGN(:);
-tsg.SHIP_MMSI = nc.SHIP_MMSI(:);
-tsg.TSG_TYPE = nc.TSG_TYPE(:);
-tsg.TSG_NUMBER = nc.TSG_NUMBER(:);
-tsg.TINT_TYPE = nc.TINT_TYPE(:);
-tsg.TINT_NUMBER = nc.TINT_NUMBER(:);
-tsg.DATA_TYPE = nc.DATA_TYPE(:);
-tsg.DATA_MODE = nc.DATA_MODE(:);
-tsg.SAMPLING_PERIOD = nc.SAMPLING_PERIOD(:);
-tsg.PROCESSING_STATUS = nc.PROCESSING_STATUS(:);
-tsg.DATE_START = nc.DATE_START(:);
-tsg.DATE_END = nc.DATE_END(:);
-tsg.SOUTH_LATX = nc.SOUTH_LATX(:);
-tsg.NORTH_LATX = nc.NORTH_LATX(:);
-tsg.WEST_LONX = nc.WEST_LONX(:);
-tsg.EAST_LONX = nc.EAST_LONX(:);
-tsg.FORMAT_VERSION = nc.FORMAT_VERSION(:);
-tsg.DATE_CREATION = nc.DATE_CREATION(:);
-tsg.DATE_UPDATE = nc.DATE_UPDATE(:);
-tsg.DATA_RESTRICTIONS = nc.DATA_RESTRICTIONS(:);
-tsg.CITATION = nc.CITATION(:);
-tsg.COMMENT = nc.COMMENT(:);
-tsg.PROJECT_NAME = nc.PROJECT_NAME(:);
-tsg.PI_NAME = nc.PI_NAME(:);
-tsg.DATA_CENTRE = nc.DATA_CENTRE(:);
-tsg.DATA_ACQUISITION = nc.DATA_ACQUISITION(:);
-tsg.PROCESSING_CENTRE = nc.PROCESSING_CENTRE(:);
-tsg.PROCESSING_STATE = nc.PROCESSING_STATE(:);
-
-% read variables describing TSG installation
-% ------------------------------------------
-
-tsg.SSJT_DEPH = nc{'SSJT_DEPH'}(:);
-tsg.SSJT_DEPH_MIN = nc{'SSJT_DEPH_MIN'}(:);
-tsg.SSJT_DEPH_MAX = nc{'SSJT_DEPH_MAX'}(:);
-tsg.CNDC_CALCOEF = nc{'CNDC_CALCOEF'}(:);
-tsg.CNDC_LINCOEF = nc{'CNDC_LINCOEF'}(:);
-tsg.SSJT_CALCOEF = nc{'SSJT_CALCOEF'}(:);
-tsg.SSJT_LINCOEF = nc{'SSJT_LINCOEF'}(:);
-
-% read variables describing Temperature sensor at intake (TINT) installation
-% --------------------------------------------------------------------------
-
-tsg.SSTP_DEPH = nc{'SSTP_DEPH'}(:);
-tsg.SSTP_DEPH_MIN = nc{'SSTP_DEPH_MIN'}(:);
-tsg.SSTP_DEPH_MAX = nc{'SSTP_DEPH_MAX'}(:);
-tsg.SSTP_CALCOEF = nc{'SSTP_CALCOEF'}(:);
-tsg.SSTP_LINCOEF = nc{'SSTP_LINCOEF'}(:);
-
-% Coordinates
-%------------
-
-tsg.DATE = nc{'DATE'}(:,:);
-tsg.DAYD = nc{'DAYD'}(:);
-tsg.LATX = nc{'LATX'}(:);
-tsg.LONX = nc{'LONX'}(:);
-tsg.POSITION_QC = nc{'POSITION_QC'}(:);
-tsg.SPDC = nc{'SPDC'}(:);
-tsg.REFERENCE_DATE_TIME = nc{'REFERENCE_DATE_TIME'}(:);
-
-% Convert julian day with origin 1950 to Matlab datenum in memory
-% ---------------------------------------------------------------
-tsg.DAYD = julianToDatenum( tsg.DAYD );
-
-% Variables holding data from the main TSG
-% data series 1
-%-----------------------------------------
-
-% measured variables
-%-----------------------------------------
-%if isempty(tsg.PRES)
- tsg.PRES = nc{'PRES'}(:);
-%end
-
-%if isempty(tsg.SSJT)
- tsg.SSJT = nc{'SSJT'}(:);
- tsg.SSJT_STD = nc{'SSJT_STD'}(:);
- tsg.SSJT_STD_CAL = nc{'TEMP_STD_CAL'}(:);
-%end
-
-%if isempty(tsg.CNDC)
- tsg.CNDC = nc{'CNDC'}(:);
- tsg.CNDC_STD = nc{'CNDC_STD'}(:);
- tsg.CNDC_CAL = nc{'CNDC_CAL'}(:);
-%end
-
-% intake temperature variable
-%-----------------------------------------
-tsg.SSTP = nc{'SSTP'}(:);
-tsg.SSTP_QC = nc{'SSTP_QC'}(:);
-tsg.SSTP_CAL = nc{'SSTP_CAL'}(:);
-tsg.SSTP_ADJUSTED = nc{'SSTP_ADJUSTED'}(:);
-tsg.SSTP_ADJUSTED_ERROR = nc{'SSTP_ADJUSTED_ERROR'}(:);
-tsg.SSTP_ADJUSTED_QC = nc{'SSTP_ADJUSTED_QC'}(:);
-tsg.SSTP_ADJUSTED_HIST = nc{'HIST_SSTP_ADJUSTED'}(:);
-
-% derived variables
-%-----------------------------------------
-tsg.SSPS = nc{'SSPS'}(:);
-tsg.SSPS_QC = nc{'SSPS_QC'}(:);
-tsg.SSPS_CAL = nc{'SSPS_CAL'}(:);
-tsg.SSPS_ADJUSTED = nc{'SSPS_ADJUSTED'}(:);
-tsg.SSPS_ADJUSTED_ERROR = nc{'SSPS_ADJUSTED_ERROR'}(:);
-tsg.SSPS_ADJUSTED_QC = nc{'SSPS_ADJUSTED_QC'}(:);
-tsg.SSPS_ADJUSTED_HIST = nc{'HIST_SSPS_ADJUSTED'}(:);
-
-% data series 2
-%-----------------------------------------
-
-% water samples
-%-----------------------------------------
-tsg.DATE_WS = nc{'DATE_WS'}(:,:);
-tsg.DAYD_WS = julianToDatenum(nc{'DAYD_WS'}(:));
-tsg.LATX_WS = nc{'LATX_WS'}(:);
-tsg.LONX_WS = nc{'LONX_WS'}(:);
-tsg.SSPS_WS = nc{'SSPS_WS'}(:);
-tsg.SSPS_WS_QC = nc{'SSPS_WS_QC'}(:);
-tsg.SSPS_WS_ANALDATE = nc{'SSPS_WS_ANALDATE'}(:,:);
-tsg.SSPS_WS_BOTTLE = nc{'SSPS_WS_BOTTLE'}(:,:);
-
-
-% Save the data in the application GUI
-% ------------------------------------
-setappdata( hTsgGUI, 'tsg_data', tsg );
-
-% Clear the Workspace
-% -------------------
-clear tsgdata
-
-% Close the file
-% --------------
-%endef(nc)
-close(nc);
-
-% Display time to read file on console
-% ------------------------------------
-t = toc; fprintf('...done (%6.2f sec).\n\n',t);
-
-% Everything OK
-% -------------
-error = 1;
-
-end
diff --git a/tsg_util/readTsgDataTxt.m b/tsg_util/readTsgDataTxt.m
deleted file mode 100644
index f57c38c7745021f9c4465879db4943bd7afa380b..0000000000000000000000000000000000000000
--- a/tsg_util/readTsgDataTxt.m
+++ /dev/null
@@ -1,105 +0,0 @@
-function [error] = readTsgDataTxt( hTsgGUI, filename)
-% Function to read the TSG data. Should be a NetCDF file
-%
-% Input
-% -----
-% hTsgGUI ............ Handle to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-%
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Get the data from the application GUI
-% -------------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Display read file info on console
-% ---------------------------------
-fprintf('\nREAD_ASCII_FILE\n'); tic;
-
-% Open the file
-% -------------
-fid = fopen( filename, 'r' );
-
-% Check file
-% -----------
-if fid == -1
- msg_error = ['TSG_GOSUD file_lecture : Open file error : ' filename];
- warndlg( msg_error, 'ASCII error dialog');
- sprintf('...cannot locate %s\n', filename);
- error = -1;
- return;
-end
-
-% Display more info about read file on console
-% --------------------------------------------
-fprintf('...reading %s : ', filename);
-
-% Read the file
-% -------------
-tsgData = fscanf(fid, '%d/%d/%d %d:%d:%d %f %f %f %f %d %f %f', ...
- [13 Inf])';
-
-% Every variable are put in a structure
-% -------------------------------------
-tsg.DAYD = datenum(tsgData(:,3), tsgData(:,2),tsgData(:,1), ...
- tsgData(:,4),tsgData(:,5),tsgData(:,6));
-
-% save original date
-% ------------------
-tsg.DATE = datestr( tsg.DAYD, 'yyyymmddHHMMSS' );
-
-% convert with julian day with origin 1950
-% -----------------------------------------
-%% a supprimer !!!!!!!
-% tsg.TIME_TSG = datenumToJulian(tsg.TIME_TSG);
-
-tsg.LATX = tsgData(:,7);
-tsg.LONX = tsgData(:,8);
-tsg.SSJT = tsgData(:,9);
-tsg.SSPS = tsgData(:,10);
-tsg.SSPS_QC = tsgData(:,11);
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-tsg.SSPS_ADJ = tsgData(:,12);
-tsg.SSPS_ERR = tsgData(:,13);
-
-% Compute ship velocity from positions if sog not available
-% ---------------------------------------------------------
-if isempty(tsg.SPDC)
- range = m_lldist(tsg.LONX,tsg.LATX);
- ind = size(tsg.DAYD);
- tsg.SPDC = zeros(size(ind));
- for i=1:length(tsg.DAYD)-1
- tsg.SPDC(i) = range(i) / ((tsg.DAYD(i+1)-tsg.DAYD(i)) * 24 * 1.854);
- end
- tsg.SPDC = [tsg.SPDC';0];
-end
-
-
-% Save the data in the application GUI
-% ------------------------------------
-setappdata( hTsgGUI, 'tsg_data', tsg );
-
-% Clear the Workspace
-% -------------------
-clear tsgdata
-
-% Close the file
-% --------------
-fclose( fid );
-
-% Display time to read file on console
-% ------------------------------------
-t = toc; fprintf('...done (%6.2f sec).\n\n',t);
-
-% Everything OK
-% -------------
-error = 1;
diff --git a/tsg_util/readTsgDataXML.m b/tsg_util/readTsgDataXML.m
deleted file mode 100644
index 8f2b79df2bc8761d86a50480a9d412d97fb8c685..0000000000000000000000000000000000000000
--- a/tsg_util/readTsgDataXML.m
+++ /dev/null
@@ -1,58 +0,0 @@
-function [error] = readTsgDataXML( hTsgGUI, filename)
-% Function to read the TSG data XML file
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% Function not yet implemented
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Open the file
-% -------------
-fid = fopen( filename, 'r' );
-
-error = -1;
-if fid ~= -1
- disp('Read XML file, not yet implemeted ...');
-% % Read the file
-% % -------------
-% tsgData = fscanf(fid, '%d/%d/%d %d:%d:%d %f %f %f %f %d %f %f', ...
-% [13 Inf])';
-%
-% % Every variable are put in a structure
-% % -------------------------------------
-% tsg.TIME = datenum(tsgData(:,3), tsgData(:,2),tsgData(:,1), ...
-% tsgData(:,4),tsgData(:,5),tsgData(:,6));
-% tsg.LATITUDE = tsgData(:,7);
-% tsg.LONGITUDE = tsgData(:,8);
-% tsg.TEMP_TSG = tsgData(:,9);
-% tsg.PSAL = tsgData(:,10);
-% tsg.PSAL_QC = tsgData(:,11);
-% tsg.PSAL_ADJ = tsgData(:,12);
-% tsg.PSAL_ERR = tsgData(:,13);
-%
-% % Save the data in the application GUI
-% % ------------------------------------
-% setappdata( hTsgGUI, 'tsg_data', tsg );
-
- % Clear the Workspace
- % -------------------
- clear tsgdata
-
- % Close the file
- % --------------
- fclose( fid );
-
- % Everything is not OK
- % -------------
- error = -1;
-end
diff --git a/tsg_util/read_file_woa01.m b/tsg_util/read_file_woa01.m
deleted file mode 100644
index aeaa694e9ad09650cd39169957e178fb1a49393c..0000000000000000000000000000000000000000
--- a/tsg_util/read_file_woa01.m
+++ /dev/null
@@ -1,60 +0,0 @@
-function levitus = read_file_woa01(file)
-% a mettre dans la classe de base oceano puisque commun a tous
-%
-% read WOA01 Levitus T-S-O2, Stddev & nb_obs Netcdf file in memory
-
-% $Id$
-
-filesfound = checkforfiles( file );
-if filesfound == 0;
- warning(['Couldn''t find ', file]);
- levitus = -1;
- return;
-end
-
-% a commenter en production
-% t = cputime;
-
-% il existe un "bug" dans netcdf ligne 409, ncitem retourne une
-% erreur dans la variable result
-nc = netcdf(which(file),'nowrite');
-
-%recupere les variables et les mets de le workspace
-variables = var(nc);
-
-% list les variables du fichier et sort
-% if strcmp( variable, 'list' )
-% disp(char(ncnames(var(nc))));
-% return
-% end
-
-% Initialise la waitbar de chargement du fichier netCDF
-wb = waitbar(0,['Loading file: ' file ' Please wait...']);
-
-for i = 1:length(variables)
- value = variables{i}(:);
- % je n'ai pas reussi a utiliser autonan avec l'attribue FillValue_
- value(value == fillval(variables{i})) = NaN;
- % Assign dynamiquely variable in struct levitus.
- levitus.(name(variables{i})) = value;
- % set(wb, 'Title', name(variables{i}));
- waitbar( i/length(variables), wb);
-end
-
-close(wb);
-close(nc);
-
-% a commenter en production
-% e = cputime-t
-%
-% builtin( 'set', findobj( 'Tag', 'main' ), 'UserData', self );
-
-%----------------------------------------------------------------------
-%----------------------------------------------------------------------
-function filesfound = checkforfiles( file )
-
-if exist(file,'file');
- filesfound = 1;
-else
- filesfound = 0;
-end
diff --git a/tsg_util/tsg_header.m b/tsg_util/tsg_header.m
deleted file mode 100644
index 26c30372e0d999feec9e1c512b58c107e922f539..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_header.m
+++ /dev/null
@@ -1,227 +0,0 @@
-function error = tsg_header(hTsgGUI)
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-%
-% Output
-% ------
-% error .............. 1: OK ; -1 : an error occured
-
-% $Id$
-
-error = -1;
-
-% Get the data from the application GUI
-% -------------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Define uicontrol start position
-% -------------------------------
-left = .01;
-bottom = .95;
-inc_x = 0.5;
-inc_y = 0.03;
-
-% set default uicontrol size
-% --------------------------
-default_height = 0.018;
-default_length = .1;
-
-
-% Get global attributes list from class tsg_nc with file 'tsg_ncattr.csv'
-% -----------------------------------------------------------------------
-nca = tsg_nc('tsg_ncattr.csv');
-nca_keys = keys(nca);
-
-
-% header Uicontrols in a new figure
-% ---------------------------------
-hHeaderFig = figure(...
- 'BackingStore','off',...
- 'Name', 'TSG GLOBAL ATTRIBUTES', ...
- 'NumberTitle', 'off', ...
- 'Resize', 'on', ...
- 'Menubar','none', ...
- 'Toolbar', 'none', ...
- 'Tag', 'GLOBAL_ATTRIBUTES', ...
- 'Visible','on',...
- 'Units', 'normalized',...
- 'Position',get(hTsgGUI,'Position'), ...
- 'Color', get( 0, 'DefaultUIControlBackgroundColor' ));
-
-% bg = [0.92549 0.913725 0.847059] = get( 0, 'DefaultUIControlBackgroundColor' );
-
-% Display fields from class
-% -------------------------
-for i=1:numel(nca_keys)
- % get key, use {} for cell
- key = nca_keys{i};
- % get all structure for the key
- s = get(nca, key);
-
- % check for empty field and replace them by default value
- % -------------------------------------------------------
- if isempty(s.length), s.length = default_length; end;
- if isempty(s.height), s.height = default_height; end;
-
- % display dynamic uicontrol text
- % use of char function prevent error when field is empty [] => ''
- % ---------------------------------------------------------------
- uicontrol(...
- 'Parent', hHeaderFig, ...
- 'Units', 'normalized', ...
- 'Style', 'Text', ...
- 'HorizontalAlignment', 'left', ...
- 'Position',[left, bottom, .8, .0135], ...
- 'TooltipString', char(s.comment), ...
- 'String', char(s.name) );
-
- % display dynamic uicontrol
- % -------------------------
- ui = uicontrol(...
- 'Parent', hHeaderFig, ...
- 'Units', 'normalized', ...
- 'BackgroundColor', 'w', ...
- 'Style', char(s.uicontrolType), ...
- 'HorizontalAlignment', char(s.horizontalAlignment), ...
- 'Position',[left+.09, bottom, s.length, s.height], ...
- 'String', char(s.string), ...
- 'Value', s.value, ...
- 'Tag', key);
-
- % set dynamically uicontrol
- % -------------------------
- switch s.uicontrolType
- case 'popupmenu'
- str = cellstr(get(ui,'String'));
- ind = strfind(str,tsg.(key));
- for k=1:numel(ind)
- if ~isempty(ind{k})
- set(ui, 'value', k);
- end
- end
- case 'edit'
- set(ui, 'string', tsg.(key));
- end
-
- % Check vertical position of last uicontrol and creation new colomn
- % -----------------------------------------------------------------
- bottom = bottom - inc_y;
- if bottom < .15
- bottom = 0.95;
- left = left + inc_x;
- end
-end
-
-
-% CONTINUE PUSH BUTTON
-% --------------------
-% The Continue (valid) button
-uicontrol( ...
- 'Parent', hHeaderFig, ...
- 'Style','pushbutton',...
- 'Units', 'normalized', ...
- 'Position',[.05, .1, .05, .02],...
- 'String','Continue',...
- 'Interruptible','off',...
- 'BusyAction','cancel',...
- 'Tag','PUSH_BUTTON',...
- 'Callback', @continueCallback);
-
-% CANCEL PUSH BUTTON
-% ------------------
-% The cancel button
-uicontrol( ...
- 'Parent', hHeaderFig, ...
- 'Style','pushbutton',...
- 'Units', 'normalized', ...
- 'Position',[.15, .1, .05, .02],...
- 'String','Cancel',...
- 'Interruptible','off',...
- 'BusyAction','cancel',...
- 'Tag','PUSH_BUTTON',...
- 'Callback', @cancelCallback);
-
-% Build structure container for graphic handles with tag property defined.
-% ------------------------------------------------------------------------
-data = guihandles(hHeaderFig);
-
-% record data struct in application data object
-% ---------------------------------------------
-%guidata(hHeaderFig, data);
-
-% stop execution until push-button Continue was press
-% ---------------------------------------------------
-uiwait(hHeaderFig);
-
-%% Nested callback
- function continueCallback(obj, event)
-
- % get uicontrol filelds and populate tsg structure
- % ------------------------------------------------
- tsg.PLATFORM_NAME = get(data.PLATFORM_NAME, 'string');
- tsg.SHIP_CALL_SIGN = get(data.SHIP_CALL_SIGN, 'string');
- tsg.SHIP_MMSI = get(data.SHIP_MMSI, 'string');
- tsg.TSG_TYPE = get(data.TSG_TYPE, 'string');
- tsg.TSG_TYPE = tsg.TSG_TYPE(get(data.TSG_TYPE, 'value'),:);
- tsg.TSG_NUMBER = get(data.TSG_NUMBER, 'string');
- tsg.TINT_TYPE = get(data.TINT_TYPE, 'string');
- tsg.TINT_TYPE = tsg.TINT_TYPE(get(data.TINT_TYPE, 'value'),:);
- tsg.TINT_NUMBER = get(data.TINT_NUMBER, 'string');
- tsg.DATA_TYPE = get(data.DATA_TYPE, 'string');
- tsg.DATA_MODE = get(data.DATA_MODE, 'string');
- tsg.DATA_MODE = tsg.DATA_MODE(get(data.DATA_MODE, 'value'),:);
- tsg.SAMPLING_PERIOD = get(data.SAMPLING_PERIOD, 'string');
- tsg.PROCESSING_STATUS = get(data.PROCESSING_STATUS, 'string');
- tsg.DATE_START = get(data.DATE_START, 'string');
- tsg.DATE_END = get(data.DATE_END, 'string');
- tsg.SOUTH_LATX = get(data.SOUTH_LATX, 'string');
- tsg.NORTH_LATX = get(data.NORTH_LATX, 'string');
- tsg.WEST_LONX = get(data.WEST_LONX, 'string');
- tsg.EAST_LONX = get(data.EAST_LONX, 'string');
- tsg.FORMAT_VERSION = get(data.FORMAT_VERSION, 'string');
- tsg.DATE_CREATION = get(data.DATE_CREATION, 'string');
- tsg.DATE_UPDATE = get(data.DATE_UPDATE, 'string');
- tsg.DATA_RESTRICTIONS = get(data.DATA_RESTRICTIONS, 'string');
- tsg.COMMENT = get(data.COMMENT, 'string');
- tsg.PROJECT_NAME = get(data.PROJECT_NAME, 'string');
- tsg.PI_NAME = get(data.PI_NAME, 'string');
- tsg.DATA_CENTRE = get(data.DATA_CENTRE, 'string');
- tsg.DATA_ACQUISITION = get(data.DATA_ACQUISITION, 'string');
- tsg.PROCESSING_CENTRE = get(data.PROCESSING_CENTRE, 'string');
- tsg.PROCESSING_STATES = get(data.PROCESSING_STATES, 'string');
-
- % Save tsg structure
- % ------------------
- setappdata( hTsgGUI, 'tsg_data', tsg);
-
- % close windows (replace call to uiresume(hHeaderFig))
- % ----------------------------------------------------
- close(hHeaderFig);
-
- % flushes the event queue and updates the figure window
- % -----------------------------------------------------
- drawnow;
-
- % return no error code (true)
- % ---------------------------
- error = 1;
- end
-
- function cancelCallback(obj, event)
-
- % close windows
- % -------------
- close(hHeaderFig);
-
- % flushes the event queue and updates the figure window
- % -----------------------------------------------------
- drawnow;
-
- % return error code (no change)
- % -----------------------------
- error = -1;
- end
-
-end
diff --git a/tsg_util/tsg_plot_SalTempVel.m b/tsg_util/tsg_plot_SalTempVel.m
deleted file mode 100644
index 12bbafc7c34339589aa68c89715a347f398f06cd..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_plot_SalTempVel.m
+++ /dev/null
@@ -1,73 +0,0 @@
-function tsg_plot_SalTempVel( hTsgGUI, hAxes )
-% Function to plot the Salinity, Temperature TSG data as well as the
-% ship velocity
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% hPlotAxes .......... Handels to the 3 graphic axes
-%
-% Output
-% ------
-% $Id$
-
-% Retrieve named application data
-% -------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-qc = getappdata( hTsgGUI, 'qcColor');
-
-% Plot the Salinity with the right color code
-% -------------------------------------------
-axes( hAxes(1));
-
-ind = find(tsg.SSPS_QC <= qc.Code.NO_CONTROL );
-plot(hAxes(1), tsg.DAYD(ind), tsg.SSPS(ind), ...
- strcat('.',qc.Color.NO_CONTROL));
-
-hold on;
-
-ind = find(tsg.SSPS_QC == qc.Code.GOOD );
-plot(hAxes(1), tsg.DAYD(ind), tsg.SSPS(ind), ...
- strcat('.',qc.Color.GOOD));
-
-ind = find(tsg.SSPS_QC == qc.Code.PROBABLY_GOOD );
-plot(hAxes(1), tsg.DAYD(ind), tsg.SSPS(ind), ...
- strcat('.',qc.Color.PROBABLY_GOOD));
-
-ind = find(tsg.SSPS_QC == qc.Code.PROBABLY_BAD );
-plot(hAxes(1), tsg.DAYD(ind), tsg.SSPS(ind), ...
- strcat('.',qc.Color.PROBABLY_BAD));
-
-ind = find(tsg.SSPS_QC == qc.Code.BAD );
-plot(hAxes(1), tsg.DAYD(ind), tsg.SSPS(ind), ...
- strcat('.',qc.Color.BAD));
-hold off;
-
-% Plot Temperature and ship velocity with no qc color code
-% ---------------------------------------------------------
-plot(hAxes(2), tsg.DAYD, tsg.SSJT, '.');
-plot(hAxes(3), tsg.DAYD, tsg.SPDC, '.k');
-
-% Formatted x-TIME axes
-% ---------------------
-datetick(hAxes(1), 'x');
-datetick(hAxes(2), 'x');
-datetick(hAxes(3), 'x');
-
-% Write some 'Y' label
-% ------------------
-set(get(hAxes(1), 'Ylabel'), 'String', 'Salinity');
-set(get(hAxes(2), 'Ylabel'), 'String', 'Temperature (°C)');
-set(get(hAxes(3), 'Ylabel'), 'String', 'Ship Velocity (knots)');
-
-% Make the axes visible
-% ---------------------
-set(hAxes(1), 'Visible', 'on' );
-set(hAxes(2), 'Visible', 'on' );
-set(hAxes(3), 'Visible', 'on' );
-
-% The 3 axes will behave identically when zoomed and panned
-% ---------------------------------------------------------
-linkaxes([hAxes(1),hAxes(2),hAxes(3)], 'x');
-
-end
diff --git a/tsg_util/tsg_plot_SalTsgSample.m b/tsg_util/tsg_plot_SalTsgSample.m
deleted file mode 100644
index 29e1c54694bfd7a869ada6444b36c90418fe0113..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_plot_SalTsgSample.m
+++ /dev/null
@@ -1,106 +0,0 @@
-function tsg_plot_SalTsgSample( hGUI, hAxes )
-%
-% Function to plot the Salinity from TSG and smaple meausrements
-%
-% Input
-% -----
-% hGUI ............... Handel to the user interface
-% hPlotAxes .......... Handels to the graphic axes
-%
-% Output
-% ------
-%
-
-% Retrieve named application data
-% -------------------------------
-tsg = getappdata( hGUI, 'tsg_data');
-sample = getappdata( hGUI, 'sample' );
-qc = getappdata( hGUI, 'qcColor');
-
-
-% Plot the Salinity with the right color code
-% -------------------------------------------
-axes( hAxes(1));
-
-ind = find(tsg.PSAL_QC <= qc.Code.NO_CONTROL );
-plot(hAxes(1), tsg.TIME(ind), tsg.PSAL(ind), ...
- strcat('.',qc.Color.NO_CONTROL));
-
-hold on;
-
-ind = find(tsg.PSAL_QC == qc.Code.GOOD );
-plot(hAxes(1), tsg.TIME(ind), tsg.PSAL(ind), ...
- strcat('.',qc.Color.GOOD));
-
-ind = find(tsg.PSAL_QC == qc.Code.PROBABLY_GOOD );
-plot(hAxes(1), tsg.TIME(ind), tsg.PSAL(ind), ...
- strcat('.',qc.Color.PROBABLY_GOOD));
-
-ind = find(tsg.PSAL_QC == qc.Code.PROBABLY_BAD );
-plot(hAxes(1), tsg.TIME(ind), tsg.PSAL(ind), ...
- strcat('.',qc.Color.PROBABLY_BAD));
-
-ind = find(tsg.PSAL_QC == qc.Code.BAD );
-plot(hAxes(1), tsg.TIME(ind), tsg.PSAL(ind), ...
- strcat('.',qc.Color.BAD));
-
-% Plot salinity sample on TSG plot
-% --------------------------------
-if ~isempty(sample)
- plot(hAxes(1), sample.TIME, sample.PSAL, 'r*');
-end
-
-
-% Plot sample measurements
-% ------------------------
-axes( hAxes(2));
-
-ind = find(sample.PSAL_QC <= qc.Code.NO_CONTROL );
-plot(hAxes(2), sample.TIME(ind), sample.PSAL_DIF(ind), ...
- strcat('o',qc.Color.NO_CONTROL));
-
-hold on;
-
-ind = find(sample.PSAL_QC == qc.Code.GOOD );
-plot(hAxes(2), sample.TIME(ind), sample.PSAL_DIF(ind), ...
- strcat('o',qc.Color.GOOD));
-
-ind = find(sample.PSAL_QC == qc.Code.PROBABLY_GOOD );
-plot(hAxes(2), sample.TIME(ind), sample.PSAL_DIF(ind), ...
- strcat('o',qc.Color.PROBABLY_GOOD));
-
-ind = find(sample.PSAL_QC == qc.Code.PROBABLY_BAD );
-plot(hAxes(2), sample.TIME(ind), sample.PSAL_DIF(ind), ...
- strcat('o',qc.Color.PROBABLY_BAD));
-
-ind = find(sample.PSAL_QC == qc.Code.BAD );
-plot(hAxes(2), sample.TIME(ind), sample.PSAL_DIF(ind), ...
- strcat('o',qc.Color.BAD));
-
-%plot(hAxes(3), tsg.TIME, tsg.TEMP_TSG, '.');
-
-% Formatted x-TIME axes
-% ---------------------
-datetick(hAxes(1), 'x');
-get(hAxes(1), 'Xlim');
-datetick(hAxes(2), 'x');
-set(hAxes(2), 'Xlim', get(hAxes(1), 'Xlim'));
-%datetick(hAxes(3), 'x');
-
-% Write some 'Y' label
-% ------------------
-set(get(hAxes(1), 'Ylabel'), 'String', 'Salinity');
-set(get(hAxes(2), 'Ylabel'), 'String', 'Salinity Difference');
-%set(get(hAxes(3), 'Ylabel'), 'String', 'Ship Velocity');
-
-% Make the axes visible
-% ---------------------
-set(hAxes(1), 'Visible', 'on' );
-set(hAxes(2), 'Visible', 'on' );
-%set(hAxes(3), 'Visible', 'on' );
-
-% The 3 axes will behave identically when zoomed and panned
-% ---------------------------------------------------------
-linkaxes([hAxes(1),hAxes(2)], 'x');
-
-end
diff --git a/tsg_util/tsg_plotmap.m b/tsg_util/tsg_plotmap.m
deleted file mode 100644
index 0a95c5f045a4492dafb5875087abd5d0e1fbcfa0..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_plotmap.m
+++ /dev/null
@@ -1,49 +0,0 @@
-function tsg_plotmap(hTsgGUI, hAxes)
-% Function to plot the earth map and ship trackline
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% hPlotAxes .......... Handels to the graphic axes
-%
-% Output
-% ------
-%
-% Library : 'M_MAP'
-%
-% PROBLEM NOT YET RESOLVED
-% Does M_MAP use 0-360° or -180°-180° covention ?
-% $Id$
-
-% Retrieve named application data
-% -------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Positionning the right axes
-% ----------------------------
-axes(hAxes(4));
-
-% Use of Mercator projection
-% --------------------------
-m_proj('Mercator','lat',[-70 70],'long',[-180 180]);
-
-% detailed coast lines
-% m_gshhs_i('patch',[.7 .7 .7]);
-
-% Less detailed coast lines
-% m_gshhs_l('patch',[.7 .7 .7]);
-
-% Lesser detailed coast lines
-% ----------------------------
-m_coast('patch',[.7 .7 .7]);
-
-m_grid('box','fancy','tickdir','in', ...
- 'ytick', [-70:20:70],...
- 'xtick', [-180:40:180],...
- 'Fontsize', [10]);
-
-% Plot the ship track - Check if LAT-LON in deg-decimal
-% -----------------------------------------------------
-m_line(tsg.LONGITUDE,tsg.LATITUDE,'marker','.','markersize',3,'color','b');
-
-end
diff --git a/tsg_util/tsg_readBucketData.m b/tsg_util/tsg_readBucketData.m
deleted file mode 100644
index 691301e05f7edeeaa560568b0c317011f20d2948..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_readBucketData.m
+++ /dev/null
@@ -1,55 +0,0 @@
-function [error] = tsg_readBucketData( hTsgGUI, filename)
-% Function to read Bucket data in ASCII format.
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'bucketASCII'
-%
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Open the file
-% -------------
-fid = fopen( filename, 'r' );
-
-error = -1;
-if fid ~= -1
-
- % Read the file - skip 2 lines
- % ----------------------------
- fgetl( fid ); fgetl( fid );
- bucketData = fscanf(fid,'%d %d %d %d %d %d %f %f %f', [9 Inf])';
-
- % Every variable are put in a structure
- % -------------------------------------
- bucketASCII.TIME = datenum(bucketData(:,1), bucketData(:,2), ...
- bucketData(:,3), bucketData(:,4), ...
- bucketData(:,5), bucketData(:,6));
- bucketASCII.LATITUDE = bucketData(:,7);
- bucketASCII.LONGITUDE = bucketData(:,8);
- bucketASCII.PSAL = bucketData(:,9);
- bucketASCII.PSAL_QC = zeros(size(bucketASCII.PSAL));
-
- % Save the data in the application GUI
- % ------------------------------------
- setappdata( hTsgGUI, 'bucketASCII', bucketASCII );
-
- % Clear the Workspace
- % -------------------
- clear bucketData
-
- % Close the file
- % --------------
- fclose( fid );
-
- % Everything OK
- % -------------
- error = 1;
-end
diff --git a/tsg_util/tsg_readTsgDataNetCDF.m b/tsg_util/tsg_readTsgDataNetCDF.m
deleted file mode 100644
index 95a7811fabf069d16b51cee9d3de7d67725609e2..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_readTsgDataNetCDF.m
+++ /dev/null
@@ -1,187 +0,0 @@
-function [error] = tsg_readTsgDataNetCDF( hTsgGUI, filename)
-% Function to read the TSG data. Should be a NetCDF file
-% GOSUD data format TSG V1.4
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% $Id$
-
-% Get the data from the application GUI
-% -------------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Display read file info on console
-% ---------------------------------
-fprintf('\nREAD_NETCDF_FILE\n'); tic;
-
-% Open netCDF file
-% ----------------
-nc = netcdf(filename,'read');
-if isempty(nc)
- msg_error = ['TSG_GOSUD file_lecture : Open file error : ' filename];
- warndlg( msg_error, 'NetCDF error dialog');
- sprintf('...cannot locate %s\n', filename);
- error = -1;
- return;
-end
-
-% Display more info about read file on console
-% --------------------------------------------
-fprintf('...reading %s : ', filename);
-
-% Read global attributes: meta data
-% ----------------------------------
-
-tsg.PLATFORM_NAME = nc.PLATFORM_NAME(:);
-tsg.SHIP_CALL_SIGN = nc.SHIP_CALL_SIGN(:);
-tsg.SHIP_MMSI = nc.SHIP_MMSI(:);
-tsg.TSG_TYPE = nc.TSG_TYPE(:);
-tsg.TSG_NUMBER = nc.TSG_NUMBER(:);
-tsg.TINT_TYPE = nc.TINT_TYPE(:);
-tsg.TINT_NUMBER = nc.TINT_NUMBER(:);
-tsg.DATA_TYPE = nc.DATA_TYPE(:);
-tsg.DATA_MODE = nc.DATA_MODE(:);
-tsg.SAMPLING_PERIOD = nc.SAMPLING_PERIOD(:);
-tsg.PROCESSING_STATUS = nc.PROCESSING_STATUS(:);
-tsg.DATE_START = nc.DATE_START(:);
-tsg.DATE_END = nc.DATE_END(:);
-tsg.SOUTH_LATX = nc.SOUTH_LATX(:);
-tsg.NORTH_LATX = nc.NORTH_LATX(:);
-tsg.WEST_LONX = nc.WEST_LONX(:);
-tsg.EAST_LONX = nc.EAST_LONX(:);
-tsg.FORMAT_VERSION = nc.FORMAT_VERSION(:);
-tsg.DATE_CREATION = nc.DATE_CREATION(:);
-tsg.DATE_UPDATE = nc.DATE_UPDATE(:);
-tsg.DATA_RESTRICTIONS = nc.DATA_RESTRICTIONS(:);
-tsg.CITATION = nc.CITATION(:);
-tsg.COMMENT = nc.COMMENT(:);
-tsg.PROJECT_NAME = nc.PROJECT_NAME(:);
-tsg.PI_NAME = nc.PI_NAME(:);
-tsg.DATA_CENTRE = nc.DATA_CENTRE(:);
-tsg.DATA_ACQUISITION = nc.DATA_ACQUISITION(:);
-tsg.PROCESSING_CENTRE = nc.PROCESSING_CENTRE(:);
-tsg.PROCESSING_STATE = nc.PROCESSING_STATE(:);
-
-% read variables describing TSG installation
-% ------------------------------------------
-
-tsg.SSJT_DEPH = nc{'SSJT_DEPH'}(:);
-tsg.SSJT_DEPH_MIN = nc{'SSJT_DEPH_MIN'}(:);
-tsg.SSJT_DEPH_MAX = nc{'SSJT_DEPH_MAX'}(:);
-tsg.CNDC_CALCOEF = nc{'CNDC_CALCOEF'}(:);
-tsg.CNDC_LINCOEF = nc{'CNDC_LINCOEF'}(:);
-tsg.SSJT_CALCOEF = nc{'SSJT_CALCOEF'}(:);
-tsg.SSJT_LINCOEF = nc{'SSJT_LINCOEF'}(:);
-
-% read variables describing Temperature sensor at intake (TINT) installation
-% --------------------------------------------------------------------------
-
-tsg.SSTP_DEPH = nc{'SSTP_DEPH'}(:);
-tsg.SSTP_DEPH_MIN = nc{'SSTP_DEPH_MIN'}(:);
-tsg.SSTP_DEPH_MAX = nc{'SSTP_DEPH_MAX'}(:);
-tsg.SSTP_CALCOEF = nc{'SSTP_CALCOEF'}(:);
-tsg.SSTP_LINCOEF = nc{'SSTP_LINCOEF'}(:);
-
-% Coordinates
-%------------
-
-tsg.DATE = nc{'DATE'}(:,:);
-tsg.DAYD = nc{'DAYD'}(:);
-tsg.LATX = nc{'LATX'}(:);
-tsg.LONX = nc{'LONX'}(:);
-tsg.POSITION_QC = nc{'POSITION_QC'}(:);
-tsg.SPDC = nc{'SPDC'}(:);
-tsg.REFERENCE_DATE_TIME = nc{'REFERENCE_DATE_TIME'}(:);
-
-% Convert julian day with origin 1950 to Matlab datenum in memory
-% ---------------------------------------------------------------
-tsg.DAYD = julianToDatenum( tsg.DAYD );
-
-% Variables holding data from the main TSG
-% data series 1
-%-----------------------------------------
-
-% measured variables
-%-----------------------------------------
-%if isempty(tsg.PRES)
- tsg.PRES = nc{'PRES'}(:);
-%end
-
-%if isempty(tsg.SSJT)
- tsg.SSJT = nc{'SSJT'}(:);
- tsg.SSJT_STD = nc{'SSJT_STD'}(:);
- tsg.SSJT_STD_CAL = nc{'TEMP_STD_CAL'}(:);
-%end
-
-%if isempty(tsg.CNDC)
- tsg.CNDC = nc{'CNDC'}(:);
- tsg.CNDC_STD = nc{'CNDC_STD'}(:);
- tsg.CNDC_CAL = nc{'CNDC_CAL'}(:);
-%end
-
-% intake temperature variable
-%-----------------------------------------
-tsg.SSTP = nc{'SSTP'}(:);
-tsg.SSTP_QC = nc{'SSTP_QC'}(:);
-tsg.SSTP_CAL = nc{'SSTP_CAL'}(:);
-tsg.SSTP_ADJUSTED = nc{'SSTP_ADJUSTED'}(:);
-tsg.SSTP_ADJUSTED_ERROR = nc{'SSTP_ADJUSTED_ERROR'}(:);
-tsg.SSTP_ADJUSTED_QC = nc{'SSTP_ADJUSTED_QC'}(:);
-tsg.SSTP_ADJUSTED_HIST = nc{'HIST_SSTP_ADJUSTED'}(:);
-
-% derived variables
-%-----------------------------------------
-tsg.SSPS = nc{'SSPS'}(:);
-tsg.SSPS_QC = nc{'SSPS_QC'}(:);
-tsg.SSPS_CAL = nc{'SSPS_CAL'}(:);
-tsg.SSPS_ADJUSTED = nc{'SSPS_ADJUSTED'}(:);
-tsg.SSPS_ADJUSTED_ERROR = nc{'SSPS_ADJUSTED_ERROR'}(:);
-tsg.SSPS_ADJUSTED_QC = nc{'SSPS_ADJUSTED_QC'}(:);
-tsg.SSPS_ADJUSTED_HIST = nc{'HIST_SSPS_ADJUSTED'}(:);
-
-% data series 2
-%-----------------------------------------
-
-% water samples
-%-----------------------------------------
-tsg.DATE_WS = nc{'DATE_WS'}(:,:);
-tsg.DAYD_WS = julianToDatenum(nc{'DAYD_WS'}(:));
-tsg.LATX_WS = nc{'LATX_WS'}(:);
-tsg.LONX_WS = nc{'LONX_WS'}(:);
-tsg.SSPS_WS = nc{'SSPS_WS'}(:);
-tsg.SSPS_WS_QC = nc{'SSPS_WS_QC'}(:);
-tsg.SSPS_WS_ANALDATE = nc{'SSPS_WS_ANALDATE'}(:,:);
-tsg.SSPS_WS_BOTTLE = nc{'SSPS_WS_BOTTLE'}(:,:);
-
-
-% Save the data in the application GUI
-% ------------------------------------
-setappdata( hTsgGUI, 'tsg_data', tsg );
-
-% Clear the Workspace
-% -------------------
-clear tsgdata
-
-% Close the file
-% --------------
-%endef(nc)
-close(nc);
-
-% Display time to read file on console
-% ------------------------------------
-t = toc; fprintf('...done (%6.2f sec).\n\n',t);
-
-% Everything OK
-% -------------
-error = 1;
-
-end
diff --git a/tsg_util/tsg_readTsgDataTxt.m b/tsg_util/tsg_readTsgDataTxt.m
deleted file mode 100644
index d73df09b679c41d4fccf28956f1fb59ddb1cdf79..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_readTsgDataTxt.m
+++ /dev/null
@@ -1,105 +0,0 @@
-function [error] = tsg_readTsgDataTxt( hTsgGUI, filename)
-% Function to read the TSG data. Should be a NetCDF file
-%
-% Input
-% -----
-% hTsgGUI ............ Handle to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-%
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Get the data from the application GUI
-% -------------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Display read file info on console
-% ---------------------------------
-fprintf('\nREAD_ASCII_FILE\n'); tic;
-
-% Open the file
-% -------------
-fid = fopen( filename, 'r' );
-
-% Check file
-% -----------
-if fid == -1
- msg_error = ['TSG_GOSUD file_lecture : Open file error : ' filename];
- warndlg( msg_error, 'ASCII error dialog');
- sprintf('...cannot locate %s\n', filename);
- error = -1;
- return;
-end
-
-% Display more info about read file on console
-% --------------------------------------------
-fprintf('...reading %s : ', filename);
-
-% Read the file
-% -------------
-tsgData = fscanf(fid, '%d/%d/%d %d:%d:%d %f %f %f %f %d %f %f', ...
- [13 Inf])';
-
-% Every variable are put in a structure
-% -------------------------------------
-tsg.DAYD = datenum(tsgData(:,3), tsgData(:,2),tsgData(:,1), ...
- tsgData(:,4),tsgData(:,5),tsgData(:,6));
-
-% save original date
-% ------------------
-tsg.DATE = datestr( tsg.DAYD, 'yyyymmddHHMMSS' );
-
-% convert with julian day with origin 1950
-% -----------------------------------------
-%% a supprimer !!!!!!!
-% tsg.TIME_TSG = datenumToJulian(tsg.TIME_TSG);
-
-tsg.LATX = tsgData(:,7);
-tsg.LONX = tsgData(:,8);
-tsg.SSJT = tsgData(:,9);
-tsg.SSPS = tsgData(:,10);
-tsg.SSPS_QC = tsgData(:,11);
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-tsg.SSPS_ADJ = tsgData(:,12);
-tsg.SSPS_ERR = tsgData(:,13);
-
-% Compute ship velocity from positions if sog not available
-% ---------------------------------------------------------
-if isempty(tsg.SPDC)
- range = m_lldist(tsg.LONX,tsg.LATX);
- ind = size(tsg.DAYD);
- tsg.SPDC = zeros(size(ind));
- for i=1:length(tsg.DAYD)-1
- tsg.SPDC(i) = range(i) / ((tsg.DAYD(i+1)-tsg.DAYD(i)) * 24 * 1.854);
- end
- tsg.SPDC = [tsg.SPDC';0];
-end
-
-
-% Save the data in the application GUI
-% ------------------------------------
-setappdata( hTsgGUI, 'tsg_data', tsg );
-
-% Clear the Workspace
-% -------------------
-clear tsgdata
-
-% Close the file
-% --------------
-fclose( fid );
-
-% Display time to read file on console
-% ------------------------------------
-t = toc; fprintf('...done (%6.2f sec).\n\n',t);
-
-% Everything OK
-% -------------
-error = 1;
diff --git a/tsg_util/tsg_readTsgDataXML.m b/tsg_util/tsg_readTsgDataXML.m
deleted file mode 100644
index d9376457dff95630df8e2edc85aaee39a51407cc..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_readTsgDataXML.m
+++ /dev/null
@@ -1,58 +0,0 @@
-function [error] = tsg_readTsgDataXML( hTsgGUI, filename)
-% Function to read the TSG data XML file
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% Function not yet implemented
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Open the file
-% -------------
-fid = fopen( filename, 'r' );
-
-error = -1;
-if fid ~= -1
- disp('Read XML file, not yet implemeted ...');
-% % Read the file
-% % -------------
-% tsgData = fscanf(fid, '%d/%d/%d %d:%d:%d %f %f %f %f %d %f %f', ...
-% [13 Inf])';
-%
-% % Every variable are put in a structure
-% % -------------------------------------
-% tsg.TIME = datenum(tsgData(:,3), tsgData(:,2),tsgData(:,1), ...
-% tsgData(:,4),tsgData(:,5),tsgData(:,6));
-% tsg.LATITUDE = tsgData(:,7);
-% tsg.LONGITUDE = tsgData(:,8);
-% tsg.TEMP_TSG = tsgData(:,9);
-% tsg.PSAL = tsgData(:,10);
-% tsg.PSAL_QC = tsgData(:,11);
-% tsg.PSAL_ADJ = tsgData(:,12);
-% tsg.PSAL_ERR = tsgData(:,13);
-%
-% % Save the data in the application GUI
-% % ------------------------------------
-% setappdata( hTsgGUI, 'tsg_data', tsg );
-
- % Clear the Workspace
- % -------------------
- clear tsgdata
-
- % Close the file
- % --------------
- fclose( fid );
-
- % Everything is not OK
- % -------------
- error = -1;
-end
diff --git a/tsg_util/tsg_writeTSGDataNetCDF.m b/tsg_util/tsg_writeTSGDataNetCDF.m
deleted file mode 100644
index 4c49a290f28fe7d3acf2b80bab30f4bb408654b3..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_writeTSGDataNetCDF.m
+++ /dev/null
@@ -1,147 +0,0 @@
-function [error] = tsg_writeTSGDataNetCDF( hTsgGUI, filename)
-% Function to write TSG data in NetCDF file.
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error ............. 1 : OK
-% ............. -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Open the file
-% -------------
-nc = netcdf(filename, 'clobber');
-if isempty(nc)
- msg_error = ['TSG_GOSUD file_lecture : Open file error : ' filename];
- warndlg( msg_error, 'NetCDF write dialog');
- error = -1;
- return;
-end
-
-% Initialize loading NetCDF file waitbar
-% --------------------------------------
-wb = waitbar(0, 'Initializing NetCDF file. Please wait...');
-
-% We cannot change title property to 'none' (default set as 'tex') inside
-% waitbar function (line 81), see
-% http://www.mathworks.co.uk/matlabcentral/newsreader/view_thread/115725
-% -----------------------------------------------------------------------
-hchild = get(wb,'children');
-htitle = get(hchild,'title');
-set(htitle,'Interpreter','None');
-
-% Get the data from the application GUI
-% -------------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Get global attributes list from class tsg_nc with file 'tsg_ncattr.csv'
-% -----------------------------------------------------------------------
-nca = tsg_nc('tsg_ncattr.csv');
-nca_keys = keys(nca);
-
-% Get GF3 variables list codes from class tsg_nc with file 'tsg_ncvar.csv'
-% -----------------------------------------------------------------------
-ncv = tsg_nc('tsg_ncvar.csv');
-ncv_keys = keys(ncv);
-ncv_fieldNames = get_fieldnames(ncv);
-
-% Create NetCDF file:
-% -------------------
-
-% Variable dimensions
-% -------------------
-nc('DAYD') = numel(tsg.DAYD); % number of TSG measurements
-nc('DAYD_WS') = numel(tsg.DAYD_WS); % number of water samples
-nc('DAYD_EXT') = numel(tsg.DAYD_EXT); % number of external SSPS or SSTP comparison
-nc('NCOEF_CAL') = 5; % number of calibration coefficients
-nc('NCOEF_LIN') = 2; % number of linearisation coefficients
-
-% Fixed dimensions
-% ----------------
-nc('STRING256') = 256;
-nc('STRING14') = 14;
-nc('STRING4') = 4;
-nc('N1') = 1;
-
-% display filename after 'Interpreter','None' initialization to prevent
-% display console warning
-% ---------------------------------------------------------------------
-waitbar(1/50,wb,['Writing file: ' filename ' Please wait...']);
-
-% Create NetCDF global attributes
-% -------------------------------
-for i=1:numel(nca_keys)
- nc.(nca_keys{i}) = tsg.(nca_keys{i});
-end
-
-% Create NetCDF variables and attributes
-% ---------------------------------------------------
-for i=1:numel(ncv_keys)
- for j=1:numel(ncv_fieldNames)
- fn = ncv_fieldNames{j};
- % define dimension
- if strcmp(fn,'dimension')
- nc{ncv_keys{i}} = ncfloat(get(ncv, ncv_keys{i}, fn));
- % define variable atributes
- elseif ~isempty(get(ncv, ncv_keys{i}, fn))
- if ischar(get(ncv, ncv_keys{i}, fn))
- nc{ncv_keys{i}}.(fn) = ncchar(get(ncv, ncv_keys{i}, fn));
- else
- nc{ncv_keys{i}}.(fn) = ncfloat(get(ncv, ncv_keys{i}, fn));
- end
- end
- end
-end
-
-% Create data to NetCDF file:
-% ---------------------------
-
-% Write global attributes
-% -----------------------
-for i=1:numel(nca_keys)
- nc.(nca_keys{i}) = tsg.(nca_keys{i});
-end
-
-% Convert Matlab julian days (datenum) to 1950 reference
-% ------------------------------------------------------
-d = strmatch('DAYD',ncv_keys);
-for i=1:numel(d)
- tsg.(ncv_keys{d(i)}) = datenumToJulian(tsg.(ncv_keys{d(i)}));
-end
-
-% Write measurements (variables)
-% -------------------------------
-for i=1:numel(ncv_keys)
- % display waitbar
- waitbar( i/numel(ncv_keys), wb, ['writing ' ncv_keys{i} ' variable']);
- % DATE as two dimension
- if strmatch('DATE',ncv_keys(i))
- nc{ncv_keys{i}}(:,:) = tsg.(ncv_keys{i});
- else
- % other one dimension
- nc{ncv_keys{i}}(:) = tsg.(ncv_keys{i});
- end
-end
-
-% Close waitbar
-% -------------
-close(wb)
-
-% Close NetCDF file
-% -----------------
-endef(nc)
-close(nc)
-
-% Everything OK
-% -------------
-error = 1;
-
-end
diff --git a/tsg_util/tsg_writeTsgData.m b/tsg_util/tsg_writeTsgData.m
deleted file mode 100644
index 9948b562a81a2368a8536d0536a56385863e9f6f..0000000000000000000000000000000000000000
--- a/tsg_util/tsg_writeTsgData.m
+++ /dev/null
@@ -1,55 +0,0 @@
-function [error] = tsg_writeTsgData( hTsgGUI, filename)
-% Function to write the TSG data. Should be a NetCDF file
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% Function to be rewritten when the NetCDF format will be in use
-% Caution : replace the fill-value with NaN
-%$Id$
-
-% Open the file
-% -------------
-fid = fopen( filename, 'w' );
-
-error = -1;
-if fid ~= -1
-
- % Get the data from the application GUI
- % -------------------------------------
- tsg = getappdata( hTsgGUI, 'tsg_data');
-
- [year, month, day, hour, min, sec] = datevec( tsg.TIME );
-
- tsg_data = [day month year hour min fix(sec) tsg.LATITUDE ...
- tsg.LONGITUDE tsg.TEMP_TSG ...
- tsg.PSAL tsg.PSAL_QC ...
- tsg.PSAL_ADJ tsg.PSAL_ERR ...
- ];
-
- % Write the file
- % -------------
- fprintf(fid,...
- '%02d/%02d/%04d %02d:%02d:%02d %11.6f %11.6f %6.3f %6.3f %1d %6.3f %6.3f\n',...
- tsg_data');
-
- % Clear the Workspace
- % -------------------
- clear tsgdata
-
- % Close the file
- % --------------
- fclose( fid );
-
- % Everything OK
- % -------------
- error = 1;
-end
diff --git a/tsg_util/writeTSGDataNetCDF.m b/tsg_util/writeTSGDataNetCDF.m
deleted file mode 100644
index 4c49a290f28fe7d3acf2b80bab30f4bb408654b3..0000000000000000000000000000000000000000
--- a/tsg_util/writeTSGDataNetCDF.m
+++ /dev/null
@@ -1,147 +0,0 @@
-function [error] = tsg_writeTSGDataNetCDF( hTsgGUI, filename)
-% Function to write TSG data in NetCDF file.
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error ............. 1 : OK
-% ............. -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% Caution : replace the fill-value with NaN
-% $Id$
-
-% Open the file
-% -------------
-nc = netcdf(filename, 'clobber');
-if isempty(nc)
- msg_error = ['TSG_GOSUD file_lecture : Open file error : ' filename];
- warndlg( msg_error, 'NetCDF write dialog');
- error = -1;
- return;
-end
-
-% Initialize loading NetCDF file waitbar
-% --------------------------------------
-wb = waitbar(0, 'Initializing NetCDF file. Please wait...');
-
-% We cannot change title property to 'none' (default set as 'tex') inside
-% waitbar function (line 81), see
-% http://www.mathworks.co.uk/matlabcentral/newsreader/view_thread/115725
-% -----------------------------------------------------------------------
-hchild = get(wb,'children');
-htitle = get(hchild,'title');
-set(htitle,'Interpreter','None');
-
-% Get the data from the application GUI
-% -------------------------------------
-tsg = getappdata( hTsgGUI, 'tsg_data');
-
-% Get global attributes list from class tsg_nc with file 'tsg_ncattr.csv'
-% -----------------------------------------------------------------------
-nca = tsg_nc('tsg_ncattr.csv');
-nca_keys = keys(nca);
-
-% Get GF3 variables list codes from class tsg_nc with file 'tsg_ncvar.csv'
-% -----------------------------------------------------------------------
-ncv = tsg_nc('tsg_ncvar.csv');
-ncv_keys = keys(ncv);
-ncv_fieldNames = get_fieldnames(ncv);
-
-% Create NetCDF file:
-% -------------------
-
-% Variable dimensions
-% -------------------
-nc('DAYD') = numel(tsg.DAYD); % number of TSG measurements
-nc('DAYD_WS') = numel(tsg.DAYD_WS); % number of water samples
-nc('DAYD_EXT') = numel(tsg.DAYD_EXT); % number of external SSPS or SSTP comparison
-nc('NCOEF_CAL') = 5; % number of calibration coefficients
-nc('NCOEF_LIN') = 2; % number of linearisation coefficients
-
-% Fixed dimensions
-% ----------------
-nc('STRING256') = 256;
-nc('STRING14') = 14;
-nc('STRING4') = 4;
-nc('N1') = 1;
-
-% display filename after 'Interpreter','None' initialization to prevent
-% display console warning
-% ---------------------------------------------------------------------
-waitbar(1/50,wb,['Writing file: ' filename ' Please wait...']);
-
-% Create NetCDF global attributes
-% -------------------------------
-for i=1:numel(nca_keys)
- nc.(nca_keys{i}) = tsg.(nca_keys{i});
-end
-
-% Create NetCDF variables and attributes
-% ---------------------------------------------------
-for i=1:numel(ncv_keys)
- for j=1:numel(ncv_fieldNames)
- fn = ncv_fieldNames{j};
- % define dimension
- if strcmp(fn,'dimension')
- nc{ncv_keys{i}} = ncfloat(get(ncv, ncv_keys{i}, fn));
- % define variable atributes
- elseif ~isempty(get(ncv, ncv_keys{i}, fn))
- if ischar(get(ncv, ncv_keys{i}, fn))
- nc{ncv_keys{i}}.(fn) = ncchar(get(ncv, ncv_keys{i}, fn));
- else
- nc{ncv_keys{i}}.(fn) = ncfloat(get(ncv, ncv_keys{i}, fn));
- end
- end
- end
-end
-
-% Create data to NetCDF file:
-% ---------------------------
-
-% Write global attributes
-% -----------------------
-for i=1:numel(nca_keys)
- nc.(nca_keys{i}) = tsg.(nca_keys{i});
-end
-
-% Convert Matlab julian days (datenum) to 1950 reference
-% ------------------------------------------------------
-d = strmatch('DAYD',ncv_keys);
-for i=1:numel(d)
- tsg.(ncv_keys{d(i)}) = datenumToJulian(tsg.(ncv_keys{d(i)}));
-end
-
-% Write measurements (variables)
-% -------------------------------
-for i=1:numel(ncv_keys)
- % display waitbar
- waitbar( i/numel(ncv_keys), wb, ['writing ' ncv_keys{i} ' variable']);
- % DATE as two dimension
- if strmatch('DATE',ncv_keys(i))
- nc{ncv_keys{i}}(:,:) = tsg.(ncv_keys{i});
- else
- % other one dimension
- nc{ncv_keys{i}}(:) = tsg.(ncv_keys{i});
- end
-end
-
-% Close waitbar
-% -------------
-close(wb)
-
-% Close NetCDF file
-% -----------------
-endef(nc)
-close(nc)
-
-% Everything OK
-% -------------
-error = 1;
-
-end
diff --git a/tsg_util/writeTsgData.m b/tsg_util/writeTsgData.m
deleted file mode 100644
index 9948b562a81a2368a8536d0536a56385863e9f6f..0000000000000000000000000000000000000000
--- a/tsg_util/writeTsgData.m
+++ /dev/null
@@ -1,55 +0,0 @@
-function [error] = tsg_writeTsgData( hTsgGUI, filename)
-% Function to write the TSG data. Should be a NetCDF file
-%
-% Input
-% -----
-% hTsgGUI ............ Handel to the main user interface
-% filename ........... Data filename
-%
-% Output
-% ------
-% error .............. 1: OK - -1 : an error occured
-%
-% The data are store using setappdata - Variable name : 'tsg_data'
-%
-% Function to be rewritten when the NetCDF format will be in use
-% Caution : replace the fill-value with NaN
-%$Id$
-
-% Open the file
-% -------------
-fid = fopen( filename, 'w' );
-
-error = -1;
-if fid ~= -1
-
- % Get the data from the application GUI
- % -------------------------------------
- tsg = getappdata( hTsgGUI, 'tsg_data');
-
- [year, month, day, hour, min, sec] = datevec( tsg.TIME );
-
- tsg_data = [day month year hour min fix(sec) tsg.LATITUDE ...
- tsg.LONGITUDE tsg.TEMP_TSG ...
- tsg.PSAL tsg.PSAL_QC ...
- tsg.PSAL_ADJ tsg.PSAL_ERR ...
- ];
-
- % Write the file
- % -------------
- fprintf(fid,...
- '%02d/%02d/%04d %02d:%02d:%02d %11.6f %11.6f %6.3f %6.3f %1d %6.3f %6.3f\n',...
- tsg_data');
-
- % Clear the Workspace
- % -------------------
- clear tsgdata
-
- % Close the file
- % --------------
- fclose( fid );
-
- % Everything OK
- % -------------
- error = 1;
-end