diff --git a/documentations/en/pages/glossary.md b/documentations/en/pages/glossary.md index 5d4c2e6d698b91b55fddb4b024e3d443764684d4..363f484bd8aca822920b90847c609c28157237b0 100644 --- a/documentations/en/pages/glossary.md +++ b/documentations/en/pages/glossary.md @@ -1,25 +1,32 @@ -# Glossary +# Glossaire -- **BAM**: Binary Alignment Map, compressed binary representation of the SAM files. -- **BAI**: BAM Indexes. +- **BAM**: _Binary Alignment Map_, compressed binary representation of the SAM files. +- **BAI**: _BAM Indexes_. -- **BED**: Browser Extensible Data, text-based format used to store genomic regions as coordinates and associated annotations. -- **BEDPED**: An extension of the BED file format, used for describing disjointed genomic features, such as paired-end sequence alignments. +- **BED**: _Browser Extensible Data_, text-based format used to store genomic regions as coordinates and associ\ +ated annotations. +- **BEDPE**: _BED Paired-End_, an extension of the BED file format, used for describing disjointed genomic feat\ +ures, such as paired-end sequence alignments. -- **FASTA**: Fast-All, text-based format for representing either nucleotide sequences or amino acid (protein) sequences. -- **FASTQ**: FASTA with Quality, text-based format storing both a biological sequence and its corresponding quality scores. -- **FAI**: FASTA Indexes. +- **FASTA**: _Fast-All_, text-based format for representing either nucleotide sequences or amino acid (protein)\ + sequences. +- **FASTQ**: _FASTA with Quality_, text-based format storing both a biological sequence and its corresponding q\ +uality scores. +- **FAI**: _FASTA Indexes_. -- **SAM**: Sequence Alignment Map, text-based format consists of a header and an alignment section. +- **SAM**: _Sequence Alignment Map_, text-based format consists of a header and an alignment section. -- **VCF**: Variant Call Format, text-base format used in bioinformatics for storing gene sequence variations. -- **TSV**: Tab-Separated Values, text-based format for storing tabular data. +- **VCF**: _Variant Call Format_, text-base format used in bioinformatics for storing gene sequence variations.\ -- **YAML**: Commonly used for configuration filesand in applications where data is being stored or transmitted. +- **TSV**: _Tab-Separated Values_, text-based format for storing tabular data. -- **GZ**: format used for file compression and decompression, normally used to compress just single files. -- **TAR**: Tarball, format collecting many files into one archive file`, extract with ```tar -xzvf archive.tar.gz````. +- **YAML**: _YAML Ain't Markup Language_, commonly used for configuration filesand in applications where data i\ +s being stored or transmitted. -- **CLI**: Command Line Interface -- **GUI**: Graphical User Interface +- **GZ**: _Gnu Zip_, format used for file compression and decompression, normally used to compress just single \ +files. +- **TAR**: _Tarball_, format collecting many files into one archive file`, extract with ```tar -xzvf archive.ta\ +r.gz````. +- **CLI**: _Command Line Interface_. +- **GUI**: _Graphical User Interface_. diff --git a/documentations/fr/pages/glossary.md b/documentations/fr/pages/glossary.md index 5d4c2e6d698b91b55fddb4b024e3d443764684d4..78d02fba1ff6bc9c97cc75b553760dd3899706b6 100644 --- a/documentations/fr/pages/glossary.md +++ b/documentations/fr/pages/glossary.md @@ -1,25 +1,28 @@ # Glossary -- **BAM**: Binary Alignment Map, compressed binary representation of the SAM files. -- **BAI**: BAM Indexes. +- **BAM** : _Binary Alignment Map_, représentation binaire compressée des fichiers SAM. +- **BAI** : _BAM Indexes_, index des fichiers BAM. -- **BED**: Browser Extensible Data, text-based format used to store genomic regions as coordinates and associated annotations. -- **BEDPED**: An extension of the BED file format, used for describing disjointed genomic features, such as paired-end sequence alignments. +- **BED** : _Browser Extensible Data_, format texte utilisé pour stocker des régions génomiques sous forme de coordonnées et d’annotations associées. -- **FASTA**: Fast-All, text-based format for representing either nucleotide sequences or amino acid (protein) sequences. -- **FASTQ**: FASTA with Quality, text-based format storing both a biological sequence and its corresponding quality scores. -- **FAI**: FASTA Indexes. +- **BEDPE** : _BED Paired-End_, extension du format BED, utilisée pour décrire des caractéristiques génomiques disjointes, comme les alignements de séquences en lecture paire (paired-end). -- **SAM**: Sequence Alignment Map, text-based format consists of a header and an alignment section. +- **FASTA** : _Fast-All_, format texte utilisé pour représenter des séquences de nucléotides ou d’acides aminés (protéines). -- **VCF**: Variant Call Format, text-base format used in bioinformatics for storing gene sequence variations. -- **TSV**: Tab-Separated Values, text-based format for storing tabular data. +- **FASTQ** : _FASTA with Quality_, format texte combinant une séquence biologique et ses scores de qualité correspondants. +- **FAI** : _FASTA Indexes_, index des fichiers FASTA. -- **YAML**: Commonly used for configuration filesand in applications where data is being stored or transmitted. +- **SAM** : _Sequence Alignment Map_, format texte comprenant un en-tête et une section d’alignement pour les données de séquençage. -- **GZ**: format used for file compression and decompression, normally used to compress just single files. -- **TAR**: Tarball, format collecting many files into one archive file`, extract with ```tar -xzvf archive.tar.gz````. +- **VCF** : _Variant Call Format_, format utilisé en bioinformatique pour stocker les variations de séquences génétiques. -- **CLI**: Command Line Interface -- **GUI**: Graphical User Interface +- **TSV** : _Tab-Separated Values_, format texte pour stocker des données tabulaires, chaque champ étant séparé par une tabulation. +- **YAML** : _YAML Ain't Markup Language_, format souvent utilisé pour les fichiers de configuration ou pour le stockage et la transmission de données. + +- **GZ** : _Gnu Zip_, format utilisé pour compresser et décompresser des fichiers uniques. + +- **TAR** : _Tarball_, format pour regrouper plusieurs fichiers dans une seule archive, que l’on extrait avec la commande tar -xzvf archive.tar.gz. + +- **CLI** : _Command Line Interface_, interface en ligne de commande. +- **GUI** : _Graphical User Interface_, interface graphique utilisateur.