From 8a90e7d2c46ec433082ccf026e641c769fb8dc6f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Nicolas=20FERNANDEZ=20NU=C3=91EZ?=
 <nicolas.fernandez@ird.fr>
Date: Thu, 29 Jun 2023 17:35:12 +0200
Subject: [PATCH] Release v.2023.06

---
 Start_GeVarLi.sh | 30 +++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/Start_GeVarLi.sh b/Start_GeVarLi.sh
index 21584d6..4cb3975 100755
--- a/Start_GeVarLi.sh
+++ b/Start_GeVarLi.sh
@@ -322,27 +322,27 @@ for snakefile in ${snakefiles_list} ; do
         --list-conda-envs ;
 done
 
-echo -e "
-${blue}## Conda Environments Cleanup ##${nc}
-${blue}-----------------------------${nc}
-"
+#echo -e "
+#${blue}## Conda Environments Cleanup ##${nc}
+#${blue}-----------------------------${nc}
+#"
 # Specify working directory (relative paths in the snakefile will use this as their origin).
 # The workflow definition in form of a snakefile.
 # Use at most N CPU cores/jobs in parallel. If N is omitted or ‘all’, the limit is set to the number of available CPU cores.
 # Set or overwrite values in the workflow config object.
 # Re-run all jobs the output of which is recognized as incomplete.
 # Cleanup unused conda environments.
-
-for snakefile in ${snakefiles_list} ; do
-    echo -e "${blue}-- ${snakefile} --${nc}" ;
-    snakemake \
-        --directory ${workdir}/ \
-        --snakefile ${workdir}/workflow/snakefiles/${snakefile}.smk \
-        --cores ${max_threads} \
-        --config os=${os} \
-        --rerun-incomplete \
-        --conda-cleanup-envs ;
-done
+#
+#for snakefile in ${snakefiles_list} ; do
+#    echo -e "${blue}-- ${snakefile} --${nc}" ;
+#    snakemake \
+#        --directory ${workdir}/ \
+#        --snakefile ${workdir}/workflow/snakefiles/${snakefile}.smk \
+#        --cores ${max_threads} \
+#        --config os=${os} \
+#        --rerun-incomplete \
+#        --conda-cleanup-envs ;
+#done
 
 echo -e "
 ${blue}## Conda Environments Setup ##${nc}
-- 
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