From 669e6993a9a16a09e8844b596b617283fc4947bf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Nicolas=20FERNANDEZ=20NU=C3=91EZ?=
 <nicolas.fernandez@ird.fr>
Date: Mon, 6 Jan 2025 12:00:31 +0100
Subject: [PATCH] Doc: Add french results

---
 documentations/en/pages/features.md | 16 ++++++++--------
 documentations/en/pages/results.md  | 19 ++++++++-----------
 documentations/fr/pages/results.md  |  8 +++-----
 documentations/mkdocs.yaml          |  4 ++--
 4 files changed, 21 insertions(+), 26 deletions(-)

diff --git a/documentations/en/pages/features.md b/documentations/en/pages/features.md
index 5eaa7c3..470cb23 100644
--- a/documentations/en/pages/features.md
+++ b/documentations/en/pages/features.md
@@ -1,18 +1,18 @@
 # Features and tools
 
 ## Workflow management
-  - Workflow ......................... Snakemake
-  - Environments ..................... Miniforge _(Conda)_
+  - Workflow _ _ _ _ _ _ _ _ _ _ _ _ _ Snakemake
+  - Environments _ _ _ _ _ _ _ _ _ _ _ Miniforge _(Conda)_
   
 ## Reads quality control
-  - Contamination checking ........... Fastq-Screen
-  - Reads qualities metrics .......... FastQC
-  - HTML reporting ................... MultiQC
+  - Contamination checking _ _ _ _ _ _ Fastq-Screen
+  - Reads qualities metrics  _ _ _ _ _ FastQC
+  - HTML reporting _ _ _ _ _ _ _ _ _ _ MultiQC
   
 ## Reads cleaning
-  - Illumina adpters trimming ........ Cutadapt
-  - Amplicon primers trimming ........ Cutadapt _('hard-clipping')_
-  - Reads quality trimming ........... Sickle-trim
+  - Illumina adpters trimming  _ _ _ _ Cutadapt
+  - Amplicon primers trimming  _ _ _ _ Cutadapt _('hard-clipping')_
+  - Reads quality trimming _ _ _ _ _ _ Sickle-trim
   
 ## Reads mapping
   - Indexing genomes ................. BWA _(or minimap2, or bowtie2)_
diff --git a/documentations/en/pages/results.md b/documentations/en/pages/results.md
index 84b8642..0ceb47a 100644
--- a/documentations/en/pages/results.md
+++ b/documentations/en/pages/results.md
@@ -3,18 +3,16 @@
 Results are available in **./results/** directry.
 
 !!! tip
-    Files tagged as [temp] are removed by default, to save disk usage.
-	If you want to keep it, please edit configuration file.
-
+    Files tagged as **[temp]** are removed by default, to save disk usage.  
+	If you want to keep them, please edit the **configuration** file.
 
 !!! note
-    Files tree:
-```shell
- 🧩 GeVarLi/
-  └── 📂 results/
-       ├── 🧬 All_{REFERENCE}_consensus_sequences.fasta
-       ├── 📊 All_{REFERENCE}_genome_coverages.tsv
-       ├── 📊 All_{REFERENCE}_nextclade_lineages.tsv
+    **Files tree**  
+    🧩 GeVarLi/
+    └── 📂 results/
+         ├── 🧬 All_{REFERENCE}_consensus_sequences.fasta
+         ├── 📊 All_{REFERENCE}_genome_coverages.tsv
+         ├── 📊 All_{REFERENCE}_nextclade_lineages.tsv
        ├── 📊 All_{REFERENCE}_pangolin_lineages.tsv
        ├── 🌐 All_readsQC_reports.html
        ├── 📂 00_Quality_Control/
@@ -92,4 +90,3 @@ Results are available in **./results/** directry.
             └── 📂 tools-log/
                  ├── 📂 awk/
                  ├── 📂 {TOOL}/
-```
diff --git a/documentations/fr/pages/results.md b/documentations/fr/pages/results.md
index e144569..8432e74 100644
--- a/documentations/fr/pages/results.md
+++ b/documentations/fr/pages/results.md
@@ -3,15 +3,13 @@
 Les résultats sont disponible dans le répertoire **./results/** , organisés comme ceci 
 
 !!! note
-    Les fichiers étiqueté comme [temp] sont supprimés par défaut, afin de préserver l'espace disque.
-	Si vous souhaiter les conserver, veuiller éditer le fichier de configuration.
+    Les fichiers étiqueté comme **[temp]** sont supprimés par défaut, afin de préserver l'espace disque.  
+	Si vous souhaiter les conserver, veuiller éditer le fichier de **configuration**.
 
 
 
 !!! note
-    Arborescence des fichiers:
-	
-    ```shell
+    **Arborescence des fichiers**  
      🧩 GeVarLi/
       └── 📂 results/
            ├── 🧬 All_{REFERENCE}_consensus_sequences.fasta
diff --git a/documentations/mkdocs.yaml b/documentations/mkdocs.yaml
index 3c53246..c8d360d 100644
--- a/documentations/mkdocs.yaml
+++ b/documentations/mkdocs.yaml
@@ -121,9 +121,9 @@ nav:
       - Acknowledgements: en/pages/acknowledgements.md
   - Accueil (fr):
       - À propos: fr/index.md
-      - Caractéristiques: fr/pages/features.md
+      - Fonctionnalités: fr/pages/features.md
       - Installations: fr/pages/installations.md
-      - Configuration: fr/pages/setup.md
+      - Configuration: fr/pages/configuration.md
       - Utilisation: fr/pages/usage.md
       - Résultats: fr/pages/results.md
       - Glossaire: fr/pages/glossary.md
-- 
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