diff --git a/README.md b/README.md
index 9171eb542f5e745fbf9b5826fddb954585e80a73..0d82b82c40c48497757ed109486837af25d86ab2 100644
--- a/README.md
+++ b/README.md
@@ -52,7 +52,7 @@ The Covid-19 epidemic has highlighted the disparities that remain between contin
 
 ### Version ###
 
-*v.2024.02*  
+*v.2024.03*  
 
 ### Rulegraph ###
 
diff --git a/Start_GeVarLi.sh b/Start_GeVarLi.sh
index ade2b9844c1e84e30a418c4d58c3da1e090d13c6..657adb0b5eaa6d3142020d75355b4bb4c1f1064b 100755
--- a/Start_GeVarLi.sh
+++ b/Start_GeVarLi.sh
@@ -10,12 +10,12 @@
 ###                                                                         ###
 ###I###R###D######U###2###3###3#######T###R###A###N###S###V###I###H###M###I####
 # Name ___________________ Start_GeVarLi.sh
-# Version ________________ v.2024.02
+# Version ________________ v.2024.03
 # Author _________________ Nicolas Fernandez
 # Affiliation ____________ IRD_U233_TransVIHMI
 # Aim ____________________ Bash script running gevarli.smk snakefile
 # Date ___________________ 2021.10.12
-# Latest modifications ___ 2024.02.07 (update nextclade to v.3.1.0)
+# Latest modifications ___ 2024.03.22 (update version)
 # Use ____________________ bash Start_GeVarLi.sh
 
 ###############################################################################
@@ -32,7 +32,7 @@ nc="\033[0m"       # no color
 ### ABOUT ###
 #############
 workdir=$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd) # Get working directory
-gevarli_version="2024.02"                              # GeVarLi version
+gevarli_version="2024.03"                              # GeVarLi version
 workflow_base_version="2024.02"                        # Workflow base version
 nextclade_version="3.1.0"                              # Nextclade version
 
@@ -47,7 +47,7 @@ ${blue}Author${nc} _________________ Nicolas Fernandez
 ${blue}Affiliation${nc} ____________ IRD_U233_TransVIHMI
 ${blue}Aim${nc} ____________________ Bash script for ${red}Ge${nc}nome assembling, ${red}Var${nc}iant calling and ${red}Li${nc}neage assignation
 ${blue}Date${nc} ___________________ 2021.10.12
-${blue}Latest modifications${nc} ___ 2024.01.26 (update Nextclade to v.3.1.0)
+${blue}Latest modifications${nc} ___ 2024.03.22 (update version)
 ${blue}Run${nc} ____________________ bash Start_GeVarLi.sh
 "
 
@@ -692,7 +692,7 @@ Author _________________ Nicolas Fernandez
 Affiliation ____________ IRD_U233_TransVIHMI
 Aim ____________________ Bash script for GeVarLi
 Date ___________________ 2021.10.12
-Latest modifications ___ 2024.01.26 (update Nextclade to v_3.1.0)
+Latest modifications ___ 2024.03.22 (update version)
 Run ____________________ bash Start_GeVarLi.sh
 
 Operating System _______ ${os}
diff --git a/configuration/config.yaml b/configuration/config.yaml
index 26cf6d7cfe426cebe6a1d1f40880ed777cd62392..541fe0123f03fc5e988f4c3808c7805561e3878f 100755
--- a/configuration/config.yaml
+++ b/configuration/config.yaml
@@ -10,12 +10,12 @@
 ###                                                                         ###
 ###I###R###D######U###2###3###3#######T###R###A###N###S###V###I###H###M###I####
 # Name ___________________ config.yaml
-# Version ________________ v.2024.02
+# Version ________________ v.2024.03
 # Author _________________ Nicolas Fernandez
 # Affiliation ____________ IRD_U233_TransVIHMI
 # Aim ____________________ Configuration yaml file for gevarli.smk snakefile
 # Date ___________________ 2021.10.12
-# Latest modifications ___ 2024.02.08 (update multiqc to v.1.19)
+# Latest modifications ___ 2024.03.22 (swith default settings)
 # Use ____________________ Edit default settings
 
 ###############################################################################
diff --git a/configuration/fastq-screen.conf b/configuration/fastq-screen.conf
index bf437066e70f12ef04123a001dc2a2733f125d26..9cf8b60de0f1ec197ab592686ea3aa509eb14bd3 100644
--- a/configuration/fastq-screen.conf
+++ b/configuration/fastq-screen.conf
@@ -8,12 +8,12 @@
 ###                                                                         ###
 ###I###R###D######U###2###3###3#######T###R###A###N###S###V###I###H###M###I####
 # Name ___________________ fastq-screen.conf
-# Version ________________ v.2023.06
+# Version ________________ v.2024.03
 # Author _________________ Nicolas Fernandez
 # Affiliation ____________ IRD_U233_TransVIHMI
 # Aim ____________________ Configuration file for Fastq-Screen (with bwa)
 # Date ___________________ 2021.04.30
-# Latest modifications ___ 2024.01.26 (add Dengue viruses)
+# Latest modifications ___ 2024.03.22 (swith default)
 # Use ____________________ Edit default settings (and add fasta reference)
 ###############################################################################
 
@@ -83,8 +83,6 @@ DATABASE	HIV		resources/indexes/bwa/HIV-1_HXB2_K-03455-1
 #DATABASE	Bat		resources/indexes/bwa/HOST_Pteropus-vampyrus_v1
 ### Human - Homo-sapiens_h38_NC-000001.11
 #DATABASE	Human		resources/indexes/bwa/HOST_Homo-sapiens_h38_NC-000001-11
-### Human - Homo-sapiens_h38_ch19_NC-000019.10
-DATABASE	Human_chr19	resources/indexes/bwa/HOST_Homo-sapiens_h38_ch19_NC-000019.10
 
 
 ###############################################################################
diff --git a/workflow/environments/linux/ivar_v.1.4.2.yaml b/workflow/environments/linux/ivar_v.1.4.2.yaml
index 82b2409e1af6b0cd3ec48003956dd949d757b79a..cd3f6cc6db97e647e1f3323349fd0ddb4d98054f 100644
--- a/workflow/environments/linux/ivar_v.1.4.2.yaml
+++ b/workflow/environments/linux/ivar_v.1.4.2.yaml
@@ -4,27 +4,27 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - bzip2=1.0.8=hd590300_5
-  - c-ares=1.26.0=hd590300_0
-  - ca-certificates=2023.11.17=hbcca054_0
-  - htslib=1.19.1=h81da01d_0
-  - ivar=1.4.2=h0033a41_2
-  - keyutils=1.6.1=h166bdaf_0
-  - krb5=1.21.2=h659d440_0
-  - libcurl=8.5.0=hca28451_0
-  - libdeflate=1.18=h0b41bf4_0
-  - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=hd590300_2
-  - libgcc-ng=13.2.0=h807b86a_4
-  - libgomp=13.2.0=h807b86a_4
-  - libnghttp2=1.58.0=h47da74e_1
-  - libssh2=1.11.0=h0841786_0
-  - libstdcxx-ng=13.2.0=h7e041cc_4
-  - libzlib=1.2.13=hd590300_5
-  - ncurses=6.4=h59595ed_2
-  - openssl=3.2.0=hd590300_1
-  - samtools=1.19.2=h50ea8bc_0
-  - xz=5.2.6=h166bdaf_0
-  - zstd=1.5.5=hfc55251_0
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bzip2=1.0.8
+  - c-ares=1.26.0
+  - ca-certificates=2023.11.17
+  - htslib=1.19.1
+  - ivar=1.4.2
+  - keyutils=1.6.1
+  - krb5=1.21.2
+  - libcurl=8.5.0
+  - libdeflate=1.18
+  - libedit=3.1.20191231
+  - libev=4.33
+  - libgcc-ng=13.2.0
+  - libgomp=13.2.0
+  - libnghttp2=1.58.0
+  - libssh2=1.11.0
+  - libstdcxx-ng=13.2.0
+  - libzlib=1.2.13
+  - ncurses=6.4
+  - openssl=3.2.0
+  - samtools=1.19.2
+  - xz=5.2.6
+  - zstd=1.5.5
diff --git a/workflow/environments/linux/minimap2_v.2.26.yaml b/workflow/environments/linux/minimap2_v.2.26.yaml
index dd5d114b52ab38a0be3bf0444f6a883295befb60..5a1dce79c6c33ff887ec6bd06cb1428545fb1811 100644
--- a/workflow/environments/linux/minimap2_v.2.26.yaml
+++ b/workflow/environments/linux/minimap2_v.2.26.yaml
@@ -4,12 +4,12 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - k8=0.2.5=hdcf5f25_4
-  - libgcc-ng=13.2.0=h807b86a_3
-  - libgomp=13.2.0=h807b86a_3
-  - libstdcxx-ng=13.2.0=h7e041cc_3
-  - libzlib=1.2.13=hd590300_5
-  - minimap2=2.26=he4a0461_2
-  - zlib=1.2.13=hd590300_5
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - k8=0.2.5
+  - libgcc-ng=13.2.0
+  - libgomp=13.2.0
+  - libstdcxx-ng=13.2.0
+  - libzlib=1.2.13
+  - minimap2=2.26
+  - zlib=1.2.13
diff --git a/workflow/environments/linux/multiqc_v.1.14.yaml b/workflow/environments/linux/multiqc_v.1.14.yaml
deleted file mode 100644
index 0caa049623f7f3434107a6cdd09d27495fe3a92a..0000000000000000000000000000000000000000
--- a/workflow/environments/linux/multiqc_v.1.14.yaml
+++ /dev/null
@@ -1,102 +0,0 @@
-name: multiqc_v.1.14
-channels:
-  - bioconda
-  - conda-forge
-  - defaults
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - brotli=1.0.9=h166bdaf_9
-  - brotli-bin=1.0.9=h166bdaf_9
-  - brotli-python=1.0.9=py311ha362b79_9
-  - bzip2=1.0.8=hd590300_5
-  - ca-certificates=2024.2.2=hbcca054_0
-  - certifi=2024.2.2=pyhd8ed1ab_0
-  - charset-normalizer=3.1.0=pyhd8ed1ab_0
-  - click=8.1.3=unix_pyhd8ed1ab_2
-  - coloredlogs=15.0.1=pyhd8ed1ab_3
-  - colormath=3.0.0=py_2
-  - contourpy=1.1.0=py311h9547e67_0
-  - cycler=0.11.0=pyhd8ed1ab_0
-  - fonttools=4.40.0=py311h459d7ec_0
-  - freetype=2.12.1=h267a509_2
-  - future=0.18.3=pyhd8ed1ab_0
-  - gmp=6.3.0=h59595ed_0
-  - humanfriendly=10.0=pyhd8ed1ab_6
-  - idna=3.4=pyhd8ed1ab_0
-  - importlib-metadata=6.7.0=pyha770c72_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - kiwisolver=1.4.4=py311h4dd048b_1
-  - lcms2=2.15=haa2dc70_1
-  - ld_impl_linux-64=2.40=h41732ed_0
-  - lerc=4.0.0=h27087fc_0
-  - libblas=3.9.0=17_linux64_openblas
-  - libbrotlicommon=1.0.9=h166bdaf_9
-  - libbrotlidec=1.0.9=h166bdaf_9
-  - libbrotlienc=1.0.9=h166bdaf_9
-  - libcblas=3.9.0=17_linux64_openblas
-  - libdeflate=1.18=h0b41bf4_0
-  - libexpat=2.5.0=hcb278e6_1
-  - libffi=3.4.2=h7f98852_5
-  - libgcc-ng=13.1.0=he5830b7_0
-  - libgfortran-ng=13.1.0=h69a702a_0
-  - libgfortran5=13.1.0=h15d22d2_0
-  - libgomp=13.1.0=he5830b7_0
-  - libjpeg-turbo=2.1.5.1=hd590300_1
-  - liblapack=3.9.0=17_linux64_openblas
-  - libnsl=2.0.0=hd590300_1
-  - libopenblas=0.3.23=pthreads_h80387f5_0
-  - libpng=1.6.39=h753d276_0
-  - libsqlite=3.42.0=h2797004_0
-  - libstdcxx-ng=13.1.0=hfd8a6a1_0
-  - libtiff=4.5.1=h8b53f26_0
-  - libuuid=2.38.1=h0b41bf4_0
-  - libwebp-base=1.3.0=h0b41bf4_0
-  - libxcb=1.15=h0b41bf4_0
-  - libzlib=1.2.13=hd590300_5
-  - lzstring=1.0.4=py_1001
-  - markdown=3.4.3=pyhd8ed1ab_0
-  - markdown-it-py=3.0.0=pyhd8ed1ab_0
-  - markupsafe=2.1.3=py311h459d7ec_1
-  - matplotlib-base=3.7.1=py311h8597a09_0
-  - mdurl=0.1.0=pyhd8ed1ab_1
-  - multiqc=1.14=pyhdfd78af_0
-  - munkres=1.0.7=py_1
-  - ncurses=6.4=h59595ed_2
-  - networkx=3.1=pyhd8ed1ab_0
-  - numpy=1.25.0=py311h64a7726_0
-  - openjpeg=2.5.0=hfec8fc6_2
-  - openssl=3.2.1=hd590300_0
-  - packaging=23.1=pyhd8ed1ab_0
-  - pandoc=3.1.3=h32600fe_0
-  - pillow=9.5.0=py311h0b84326_1
-  - pip=23.1.2=pyhd8ed1ab_0
-  - pthread-stubs=0.4=h36c2ea0_1001
-  - pygments=2.15.1=pyhd8ed1ab_0
-  - pyparsing=3.1.0=pyhd8ed1ab_0
-  - pysocks=1.7.1=pyha2e5f31_6
-  - python=3.11.4=hab00c5b_0_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python_abi=3.11=4_cp311
-  - pyyaml=6.0.1=py311h459d7ec_1
-  - readline=8.2=h8228510_1
-  - requests=2.31.0=pyhd8ed1ab_0
-  - rich=13.4.2=pyhd8ed1ab_0
-  - rich-click=1.6.1=pyhd8ed1ab_0
-  - setuptools=68.0.0=pyhd8ed1ab_0
-  - simplejson=3.19.1=py311h459d7ec_1
-  - six=1.16.0=pyh6c4a22f_0
-  - spectra=0.0.11=py_1
-  - tk=8.6.12=h27826a3_0
-  - typing_extensions=4.6.3=pyha770c72_0
-  - tzdata=2023c=h71feb2d_0
-  - urllib3=2.0.3=pyhd8ed1ab_1
-  - wheel=0.40.0=pyhd8ed1ab_1
-  - xorg-libxau=1.0.11=hd590300_0
-  - xorg-libxdmcp=1.1.3=h7f98852_0
-  - xz=5.2.6=h166bdaf_0
-  - yaml=0.2.5=h7f98852_2
-  - zipp=3.15.0=pyhd8ed1ab_0
-  - zlib=1.2.13=hd590300_5
-  - zstd=1.5.2=hfc55251_7
-prefix: /home/fernandez/.conda/envs/multiqc_v.1.14
diff --git a/workflow/environments/linux/multiqc_v.1.19.yaml b/workflow/environments/linux/multiqc_v.1.19.yaml
index cd7eab2e37276c0ff93453a134dc8dcdb4390344..da66082a05265a277137d11755de29a48d718313 100644
--- a/workflow/environments/linux/multiqc_v.1.19.yaml
+++ b/workflow/environments/linux/multiqc_v.1.19.yaml
@@ -4,101 +4,101 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - brotli=1.1.0=hd590300_1
-  - brotli-bin=1.1.0=hd590300_1
-  - brotli-python=1.1.0=py311hb755f60_1
-  - bzip2=1.0.8=hd590300_5
-  - ca-certificates=2024.2.2=hbcca054_0
-  - certifi=2024.2.2=pyhd8ed1ab_0
-  - charset-normalizer=3.3.2=pyhd8ed1ab_0
-  - click=8.1.7=unix_pyh707e725_0
-  - coloredlogs=15.0.1=pyhd8ed1ab_3
-  - colormath=3.0.0=py_2
-  - contourpy=1.2.0=py311h9547e67_0
-  - cycler=0.12.1=pyhd8ed1ab_0
-  - fonttools=4.48.1=py311h459d7ec_0
-  - freetype=2.12.1=h267a509_2
-  - future=0.18.3=pyhd8ed1ab_0
-  - gmp=6.3.0=h59595ed_0
-  - humanfriendly=10.0=pyhd8ed1ab_6
-  - humanize=4.9.0=pyhd8ed1ab_0
-  - idna=3.6=pyhd8ed1ab_0
-  - importlib-metadata=7.0.1=pyha770c72_0
-  - jinja2=3.1.3=pyhd8ed1ab_0
-  - kiwisolver=1.4.5=py311h9547e67_1
-  - lcms2=2.16=hb7c19ff_0
-  - ld_impl_linux-64=2.40=h41732ed_0
-  - lerc=4.0.0=h27087fc_0
-  - libblas=3.9.0=21_linux64_openblas
-  - libbrotlicommon=1.1.0=hd590300_1
-  - libbrotlidec=1.1.0=hd590300_1
-  - libbrotlienc=1.1.0=hd590300_1
-  - libcblas=3.9.0=21_linux64_openblas
-  - libdeflate=1.19=hd590300_0
-  - libexpat=2.5.0=hcb278e6_1
-  - libffi=3.4.2=h7f98852_5
-  - libgcc-ng=13.2.0=h807b86a_5
-  - libgfortran-ng=13.2.0=h69a702a_5
-  - libgfortran5=13.2.0=ha4646dd_5
-  - libgomp=13.2.0=h807b86a_5
-  - libjpeg-turbo=3.0.0=hd590300_1
-  - liblapack=3.9.0=21_linux64_openblas
-  - libnsl=2.0.1=hd590300_0
-  - libopenblas=0.3.26=pthreads_h413a1c8_0
-  - libpng=1.6.42=h2797004_0
-  - libsqlite=3.44.2=h2797004_0
-  - libstdcxx-ng=13.2.0=h7e041cc_5
-  - libtiff=4.6.0=ha9c0a0a_2
-  - libuuid=2.38.1=h0b41bf4_0
-  - libwebp-base=1.3.2=hd590300_0
-  - libxcb=1.15=h0b41bf4_0
-  - libxcrypt=4.4.36=hd590300_1
-  - libzlib=1.2.13=hd590300_5
-  - lzstring=1.0.4=py_1001
-  - markdown=3.5.2=pyhd8ed1ab_0
-  - markdown-it-py=3.0.0=pyhd8ed1ab_0
-  - markupsafe=2.1.5=py311h459d7ec_0
-  - matplotlib-base=3.8.2=py311h54ef318_0
-  - mdurl=0.1.2=pyhd8ed1ab_0
-  - multiqc=1.19=pyhdfd78af_0
-  - munkres=1.0.7=py_1
-  - ncurses=6.4=h59595ed_2
-  - networkx=3.2.1=pyhd8ed1ab_0
-  - numpy=1.26.4=py311h64a7726_0
-  - openjpeg=2.5.0=h488ebb8_3
-  - openssl=3.2.1=hd590300_0
-  - packaging=23.2=pyhd8ed1ab_0
-  - pandoc=3.1.3=h32600fe_0
-  - pillow=10.2.0=py311ha6c5da5_0
-  - pip=24.0=pyhd8ed1ab_0
-  - pthread-stubs=0.4=h36c2ea0_1001
-  - pyaml-env=1.1.0=pyhd8ed1ab_0
-  - pygments=2.17.2=pyhd8ed1ab_0
-  - pyparsing=3.1.1=pyhd8ed1ab_0
-  - pysocks=1.7.1=pyha2e5f31_6
-  - python=3.11.7=hab00c5b_1_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python_abi=3.11=4_cp311
-  - pyyaml=5.4.1=py311hd4cff14_4
-  - readline=8.2=h8228510_1
-  - requests=2.31.0=pyhd8ed1ab_0
-  - rich=13.7.0=pyhd8ed1ab_0
-  - rich-click=1.7.3=pyhd8ed1ab_0
-  - setuptools=69.0.3=pyhd8ed1ab_0
-  - simplejson=3.19.2=py311h459d7ec_0
-  - six=1.16.0=pyh6c4a22f_0
-  - spectra=0.0.11=py_1
-  - tk=8.6.13=noxft_h4845f30_101
-  - typing_extensions=4.9.0=pyha770c72_0
-  - tzdata=2024a=h0c530f3_0
-  - urllib3=2.2.0=pyhd8ed1ab_0
-  - wheel=0.42.0=pyhd8ed1ab_0
-  - xorg-libxau=1.0.11=hd590300_0
-  - xorg-libxdmcp=1.1.3=h7f98852_0
-  - xz=5.2.6=h166bdaf_0
-  - yaml=0.2.5=h7f98852_2
-  - zipp=3.17.0=pyhd8ed1ab_0
-  - zlib=1.2.13=hd590300_5
-  - zstd=1.5.5=hfc55251_0
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - brotli=1.1.0
+  - brotli-bin=1.1.0
+  - brotli-python=1.1.0
+  - bzip2=1.0.8
+  - ca-certificates=2024.2.2
+  - certifi=2024.2.2
+  - charset-normalizer=3.3.2
+  - click=8.1.7
+  - coloredlogs=15.0.1
+  - colormath=3.0.0
+  - contourpy=1.2.0
+  - cycler=0.12.1
+  - fonttools=4.48.1
+  - freetype=2.12.1
+  - future=0.18.3
+  - gmp=6.3.0
+  - humanfriendly=10.0
+  - humanize=4.9.0
+  - idna=3.6
+  - importlib-metadata=7.0.1
+  - jinja2=3.1.3
+  - kiwisolver=1.4.5
+  - lcms2=2.16
+  - ld_impl_linux-64=2.40
+  - lerc=4.0.0
+  - libblas=3.9.0
+  - libbrotlicommon=1.1.0
+  - libbrotlidec=1.1.0
+  - libbrotlienc=1.1.0
+  - libcblas=3.9.0
+  - libdeflate=1.19
+  - libexpat=2.5.0
+  - libffi=3.4.2
+  - libgcc-ng=13.2.0
+  - libgfortran-ng=13.2.0
+  - libgfortran5=13.2.0
+  - libgomp=13.2.0
+  - libjpeg-turbo=3.0.0
+  - liblapack=3.9.0
+  - libnsl=2.0.1
+  - libopenblas=0.3.26
+  - libpng=1.6.42
+  - libsqlite=3.44.2
+  - libstdcxx-ng=13.2.0
+  - libtiff=4.6.0
+  - libuuid=2.38.1
+  - libwebp-base=1.3.2
+  - libxcb=1.15
+  - libxcrypt=4.4.36
+  - libzlib=1.2.13
+  - lzstring=1.0.4
+  - markdown=3.5.2
+  - markdown-it-py=3.0.0
+  - markupsafe=2.1.5
+  - matplotlib-base=3.8.2
+  - mdurl=0.1.2
+  - multiqc=1.19
+  - munkres=1.0.7
+  - ncurses=6.4
+  - networkx=3.2.1
+  - numpy=1.26.4
+  - openjpeg=2.5.0
+  - openssl=3.2.1
+  - packaging=23.2
+  - pandoc=3.1.3
+  - pillow=10.2.0
+  - pip=24.0
+  - pthread-stubs=0.4
+  - pyaml-env=1.1.0
+  - pygments=2.17.2
+  - pyparsing=3.1.1
+  - pysocks=1.7.1
+  - python=3.11.7
+  - python-dateutil=2.8.2
+  - python_abi=3.11
+  - pyyaml=5.4.1
+  - readline=8.2
+  - requests=2.31.0
+  - rich=13.7.0
+  - rich-click=1.7.3
+  - setuptools=69.0.3
+  - simplejson=3.19.2
+  - six=1.16.0
+  - spectra=0.0.11
+  - tk=8.6.13
+  - typing_extensions=4.9.0
+  - tzdata=2024a
+  - urllib3=2.2.0
+  - wheel=0.42.0
+  - xorg-libxau=1.0.11
+  - xorg-libxdmcp=1.1.3
+  - xz=5.2.6
+  - yaml=0.2.5
+  - zipp=3.17.0
+  - zlib=1.2.13
+  - zstd=1.5.5
diff --git a/workflow/environments/linux/nextclade_v.3.1.0.yaml b/workflow/environments/linux/nextclade_v.3.1.0.yaml
index d5bebc2005f75d9192b0e7437e9eff4b187299df..081eba82c6b71845e5cf87f461423be1b61c2f9d 100644
--- a/workflow/environments/linux/nextclade_v.3.1.0.yaml
+++ b/workflow/environments/linux/nextclade_v.3.1.0.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - nextclade=3.1.0=h9ee0642_0
+  - nextclade=3.1.0
diff --git a/workflow/environments/linux/tsv2vcf_v.1.0.yaml b/workflow/environments/linux/tsv2vcf_v.1.0.yaml
index 182f72c65e837f7eef1b8405518aa3f5fcaac515..649fd178ec048aa5bb69f957603d53522dfe277c 100644
--- a/workflow/environments/linux/tsv2vcf_v.1.0.yaml
+++ b/workflow/environments/linux/tsv2vcf_v.1.0.yaml
@@ -3,12 +3,12 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - biopython=1.83=py312h98912ed_0
-  - bzip2=1.0.8=hd590300_5
-  - ca-certificates=2024.2.2=hbcca054_0
-  - ld_impl_linux-64=2.40=h41732ed_0
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - biopython=1.83
+  - bzip2=1.0.8
+  - ca-certificates=2024.2.2
+  - ld_impl_linux-64=2.40
   - libblas=3.9.0=21_linux64_openblas
   - libcblas=3.9.0=21_linux64_openblas
   - libexpat=2.5.0=hcb278e6_1
diff --git a/workflow/environments/linux/workflow-base_v.2024.02.yaml b/workflow/environments/linux/workflow-base_v.2024.02.yaml
index f0d71d5fbbde7e33496aca2a43ca2c8e9bf2bbf6..591f8c43d7f9ac48f3e8f7489baa392b44275a40 100644
--- a/workflow/environments/linux/workflow-base_v.2024.02.yaml
+++ b/workflow/environments/linux/workflow-base_v.2024.02.yaml
@@ -4,221 +4,221 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - amply=0.1.6=pyhd8ed1ab_0
-  - appdirs=1.4.4=pyh9f0ad1d_0
-  - archspec=0.2.2=pyhd8ed1ab_0
-  - argcomplete=3.2.2=pyhd8ed1ab_0
-  - argparse-dataclass=2.0.0=pyhd8ed1ab_0
-  - atk-1.0=2.38.0=hd4edc92_1
-  - attmap=0.13.2=pyhd8ed1ab_0
-  - attrs=23.2.0=pyh71513ae_0
-  - boltons=23.1.1=pyhd8ed1ab_0
-  - brotli-python=1.1.0=py312h30efb56_1
-  - bzip2=1.0.8=hd590300_5
-  - c-ares=1.26.0=hd590300_0
-  - ca-certificates=2024.2.2=hbcca054_0
-  - cairo=1.18.0=h3faef2a_0
-  - certifi=2024.2.2=pyhd8ed1ab_0
-  - cffi=1.16.0=py312hf06ca03_0
-  - charset-normalizer=3.3.2=pyhd8ed1ab_0
-  - coin-or-cbc=2.10.10=h9002f0b_0
-  - coin-or-cgl=0.60.7=h516709c_0
-  - coin-or-clp=1.17.8=h1ee7a9c_0
-  - coin-or-osi=0.108.8=ha2443b9_0
-  - coin-or-utils=2.11.9=hee58242_0
-  - coincbc=2.10.10=0_metapackage
-  - colorama=0.4.6=pyhd8ed1ab_0
-  - conda=23.11.0=py312h7900ff3_1
-  - conda-inject=1.3.1=pyhd8ed1ab_0
-  - conda-libmamba-solver=24.1.0=pyhd8ed1ab_0
-  - conda-package-handling=2.2.0=pyh38be061_0
-  - conda-package-streaming=0.9.0=pyhd8ed1ab_0
-  - configargparse=1.7=pyhd8ed1ab_0
-  - connection_pool=0.0.3=pyhd3deb0d_0
-  - datrie=0.8.2=py312h98912ed_7
-  - distro=1.9.0=pyhd8ed1ab_0
-  - docutils=0.20.1=py312h7900ff3_3
-  - dpath=2.1.6=pyha770c72_0
-  - eido=0.2.2=pyhd8ed1ab_0
-  - exceptiongroup=1.2.0=pyhd8ed1ab_2
-  - expat=2.5.0=hcb278e6_1
-  - fmt=10.2.1=h00ab1b0_0
-  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
-  - font-ttf-inconsolata=3.000=h77eed37_0
-  - font-ttf-source-code-pro=2.038=h77eed37_0
-  - font-ttf-ubuntu=0.83=h77eed37_1
-  - fontconfig=2.14.2=h14ed4e7_0
-  - fonts-conda-ecosystem=1=0
-  - fonts-conda-forge=1=0
-  - freetype=2.12.1=h267a509_2
-  - fribidi=1.0.10=h36c2ea0_0
-  - gdk-pixbuf=2.42.10=h829c605_4
-  - gettext=0.21.1=h27087fc_0
-  - giflib=5.2.1=h0b41bf4_3
-  - gitdb=4.0.11=pyhd8ed1ab_0
-  - gitpython=3.1.41=pyhd8ed1ab_0
-  - graphite2=1.3.13=h58526e2_1001
-  - graphviz=9.0.0=h78e8752_1
-  - gtk2=2.24.33=h7f000aa_3
-  - gts=0.7.6=h977cf35_4
-  - harfbuzz=8.3.0=h3d44ed6_0
-  - humanfriendly=10.0=pyhd8ed1ab_6
-  - icu=73.2=h59595ed_0
-  - idna=3.6=pyhd8ed1ab_0
-  - immutables=0.20=py312h98912ed_1
-  - importlib_resources=6.1.1=pyhd8ed1ab_0
-  - iniconfig=2.0.0=pyhd8ed1ab_0
-  - jinja2=3.1.3=pyhd8ed1ab_0
-  - jq=1.5=0
-  - jsonpatch=1.33=pyhd8ed1ab_0
-  - jsonpointer=2.4=py312h7900ff3_3
-  - jsonschema=4.21.1=pyhd8ed1ab_0
-  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
-  - jupyter_core=5.7.1=py312h7900ff3_0
-  - keyutils=1.6.1=h166bdaf_0
-  - krb5=1.21.2=h659d440_0
-  - ld_impl_linux-64=2.40=h41732ed_0
-  - lerc=4.0.0=h27087fc_0
-  - libarchive=3.7.2=h2aa1ff5_1
-  - libblas=3.9.0=21_linux64_openblas
-  - libcblas=3.9.0=21_linux64_openblas
-  - libcurl=8.5.0=hca28451_0
-  - libdeflate=1.19=hd590300_0
-  - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=hd590300_2
-  - libexpat=2.5.0=hcb278e6_1
-  - libffi=3.4.2=h7f98852_5
-  - libgcc=7.2.0=h69d50b8_2
-  - libgcc-ng=13.2.0=h807b86a_5
-  - libgd=2.3.3=h119a65a_9
-  - libgfortran-ng=13.2.0=h69a702a_5
-  - libgfortran5=13.2.0=ha4646dd_5
-  - libglib=2.78.3=h783c2da_0
-  - libgomp=13.2.0=h807b86a_5
-  - libiconv=1.17=hd590300_2
-  - libjpeg-turbo=3.0.0=hd590300_1
-  - liblapack=3.9.0=21_linux64_openblas
-  - liblapacke=3.9.0=21_linux64_openblas
-  - libmamba=1.5.6=had39da4_0
-  - libmambapy=1.5.6=py312hd9e9ff6_0
-  - libnghttp2=1.58.0=h47da74e_1
-  - libnsl=2.0.1=hd590300_0
-  - libopenblas=0.3.26=pthreads_h413a1c8_0
-  - libpng=1.6.42=h2797004_0
-  - librsvg=2.56.3=he3f83f7_1
-  - libsolv=0.7.28=hfc55251_0
-  - libsqlite=3.44.2=h2797004_0
-  - libssh2=1.11.0=h0841786_0
-  - libstdcxx-ng=13.2.0=h7e041cc_5
-  - libtiff=4.6.0=ha9c0a0a_2
-  - libuuid=2.38.1=h0b41bf4_0
-  - libwebp=1.3.2=h658648e_1
-  - libwebp-base=1.3.2=hd590300_0
-  - libxcb=1.15=h0b41bf4_0
-  - libxcrypt=4.4.36=hd590300_1
-  - libxml2=2.12.5=h232c23b_0
-  - libzlib=1.2.13=hd590300_5
-  - logmuse=0.2.6=pyh8c360ce_0
-  - lz4-c=1.9.4=hcb278e6_0
-  - lzo=2.10=h516909a_1000
-  - mamba=1.5.6=py312h9460a1c_0
-  - markdown-it-py=3.0.0=pyhd8ed1ab_0
-  - markupsafe=2.1.5=py312h98912ed_0
-  - mdurl=0.1.2=pyhd8ed1ab_0
-  - menuinst=2.0.2=py312h7900ff3_0
-  - nbformat=5.9.2=pyhd8ed1ab_0
-  - ncurses=6.4=h59595ed_2
-  - numpy=1.26.4=py312heda63a1_0
-  - openssl=3.2.1=hd590300_0
-  - packaging=23.2=pyhd8ed1ab_0
-  - pandas=2.2.0=py312hfb8ada1_0
-  - pango=1.50.14=ha41ecd1_2
-  - pcre2=10.42=hcad00b1_0
-  - peppy=0.40.1=pyhd8ed1ab_0
-  - perl=5.32.1=7_hd590300_perl5
-  - pip=24.0=pyhd8ed1ab_0
-  - pixman=0.43.2=h59595ed_0
-  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
-  - plac=1.4.2=pyhd8ed1ab_0
-  - platformdirs=4.2.0=pyhd8ed1ab_0
-  - pluggy=1.4.0=pyhd8ed1ab_0
-  - psutil=5.9.8=py312h98912ed_0
-  - pthread-stubs=0.4=h36c2ea0_1001
-  - pulp=2.8.0=py312h7900ff3_0
-  - pybind11-abi=4=hd8ed1ab_3
-  - pycosat=0.6.6=py312h98912ed_0
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pygments=2.17.2=pyhd8ed1ab_0
-  - pyparsing=3.1.1=pyhd8ed1ab_0
-  - pysocks=1.7.1=pyha2e5f31_6
-  - pytest=8.0.0=pyhd8ed1ab_0
-  - python=3.12.1=hab00c5b_1_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python-fastjsonschema=2.19.1=pyhd8ed1ab_0
-  - python-tzdata=2023.4=pyhd8ed1ab_0
-  - python_abi=3.12=4_cp312
-  - pytz=2024.1=pyhd8ed1ab_0
-  - pyyaml=6.0.1=py312h98912ed_1
-  - readline=8.2=h8228510_1
-  - referencing=0.33.0=pyhd8ed1ab_0
-  - rename=1.601=hdfd78af_1
-  - reproc=14.2.4.post0=hd590300_1
-  - reproc-cpp=14.2.4.post0=h59595ed_1
-  - requests=2.31.0=pyhd8ed1ab_0
-  - reretry=0.11.8=pyhd8ed1ab_0
-  - rich=13.7.0=pyhd8ed1ab_0
-  - rpds-py=0.17.1=py312h4b3b743_0
-  - ruamel.yaml=0.18.6=py312h98912ed_0
-  - ruamel.yaml.clib=0.2.8=py312h98912ed_0
-  - setuptools=69.0.3=pyhd8ed1ab_0
-  - six=1.16.0=pyh6c4a22f_0
-  - slack-sdk=3.26.2=pyha770c72_0
-  - slack_sdk=3.26.2=hd8ed1ab_0
-  - smart_open=6.4.0=pyhd8ed1ab_0
-  - smmap=5.0.0=pyhd8ed1ab_0
-  - snakemake=8.4.6=hdfd78af_0
-  - snakemake-interface-common=1.15.3=pyhdfd78af_0
-  - snakemake-interface-executor-plugins=8.2.0=pyhdfd78af_0
-  - snakemake-interface-storage-plugins=3.0.0=pyhdfd78af_0
-  - snakemake-minimal=8.4.6=pyhdfd78af_0
-  - stopit=1.1.2=py_0
-  - tabulate=0.9.0=pyhd8ed1ab_1
-  - throttler=1.2.2=pyhd8ed1ab_0
-  - tk=8.6.13=noxft_h4845f30_101
-  - toml=0.10.2=pyhd8ed1ab_0
-  - tomli=2.0.1=pyhd8ed1ab_0
-  - tomlkit=0.12.3=pyha770c72_0
-  - toposort=1.10=pyhd8ed1ab_0
-  - tqdm=4.66.1=pyhd8ed1ab_0
-  - traitlets=5.14.1=pyhd8ed1ab_0
-  - truststore=0.8.0=pyhd8ed1ab_0
-  - typing_extensions=4.9.0=pyha770c72_0
-  - tzdata=2024a=h0c530f3_0
-  - ubiquerg=0.7.0=pyhd8ed1ab_0
-  - urllib3=2.2.0=pyhd8ed1ab_0
-  - veracitools=0.1.3=py_0
-  - wheel=0.42.0=pyhd8ed1ab_0
-  - wrapt=1.16.0=py312h98912ed_0
-  - xmltodict=0.13.0=pyhd8ed1ab_0
-  - xorg-kbproto=1.0.7=h7f98852_1002
-  - xorg-libice=1.1.1=hd590300_0
-  - xorg-libsm=1.2.4=h7391055_0
-  - xorg-libx11=1.8.7=h8ee46fc_0
-  - xorg-libxau=1.0.11=hd590300_0
-  - xorg-libxdmcp=1.1.3=h7f98852_0
-  - xorg-libxext=1.3.4=h0b41bf4_2
-  - xorg-libxrender=0.9.11=hd590300_0
-  - xorg-renderproto=0.11.1=h7f98852_1002
-  - xorg-xextproto=7.3.0=h0b41bf4_1003
-  - xorg-xproto=7.0.31=h7f98852_1007
-  - xz=5.2.6=h166bdaf_0
-  - yaml=0.2.5=h7f98852_2
-  - yaml-cpp=0.8.0=h59595ed_0
-  - yq=3.2.3=pyhd8ed1ab_0
-  - yte=1.5.4=pyha770c72_0
-  - zipp=3.17.0=pyhd8ed1ab_0
-  - zlib=1.2.13=hd590300_5
-  - zstandard=0.22.0=py312hd58854c_0
-  - zstd=1.5.5=hfc55251_0
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - amply=0.1.6
+  - appdirs=1.4.4
+  - archspec=0.2.2
+  - argcomplete=3.2.2
+  - argparse-dataclass=2.0.0
+  - atk-1.0=2.38.0
+  - attmap=0.13.2
+  - attrs=23.2.0
+  - boltons=23.1.1
+  - brotli-python=1.1.0
+  - bzip2=1.0.8
+  - c-ares=1.26.0
+  - ca-certificates=2024.2.2
+  - cairo=1.18.0
+  - certifi=2024.2.2
+  - cffi=1.16.0
+  - charset-normalizer=3.3.2
+  - coin-or-cbc=2.10.10
+  - coin-or-cgl=0.60.7
+  - coin-or-clp=1.17.8
+  - coin-or-osi=0.108.8
+  - coin-or-utils=2.11.9
+  - coincbc=2.10.10
+  - colorama=0.4.6
+  - conda=23.11.0
+  - conda-inject=1.3.1
+  - conda-libmamba-solver=24.1.0
+  - conda-package-handling=2.2.0
+  - conda-package-streaming=0.9.0
+  - configargparse=1.7
+  - connection_pool=0.0.3
+  - datrie=0.8.2
+  - distro=1.9.0
+  - docutils=0.20.1
+  - dpath=2.1.6
+  - eido=0.2.2
+  - exceptiongroup=1.2.0
+  - expat=2.5.0
+  - fmt=10.2.1
+  - font-ttf-dejavu-sans-mono=2.37
+  - font-ttf-inconsolata=3.000
+  - font-ttf-source-code-pro=2.038
+  - font-ttf-ubuntu=0.83
+  - fontconfig=2.14.2
+  - fonts-conda-ecosystem=1
+  - fonts-conda-forge=1
+  - freetype=2.12.1
+  - fribidi=1.0.10
+  - gdk-pixbuf=2.42.10
+  - gettext=0.21.1
+  - giflib=5.2.1
+  - gitdb=4.0.11
+  - gitpython=3.1.41
+  - graphite2=1.3.13
+  - graphviz=9.0.0
+  - gtk2=2.24.33
+  - gts=0.7.6
+  - harfbuzz=8.3.0
+  - humanfriendly=10.0
+  - icu=73.2
+  - idna=3.6
+  - immutables=0.20
+  - importlib_resources=6.1.1
+  - iniconfig=2.0.0
+  - jinja2=3.1.3
+  - jq=1.5
+  - jsonpatch=1.33
+  - jsonpointer=2.4
+  - jsonschema=4.21.1
+  - jsonschema-specifications=2023.12.1
+  - jupyter_core=5.7.1
+  - keyutils=1.6.1
+  - krb5=1.21.2
+  - ld_impl_linux-64=2.40
+  - lerc=4.0.0
+  - libarchive=3.7.2
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libcurl=8.5.0
+  - libdeflate=1.19
+  - libedit=3.1.20191231
+  - libev=4.33
+  - libexpat=2.5.0
+  - libffi=3.4.2
+  - libgcc=7.2.0
+  - libgcc-ng=13.2.0
+  - libgd=2.3.3
+  - libgfortran-ng=13.2.0
+  - libgfortran5=13.2.0
+  - libglib=2.78.3
+  - libgomp=13.2.0
+  - libiconv=1.17
+  - libjpeg-turbo=3.0.0
+  - liblapack=3.9.0
+  - liblapacke=3.9.0
+  - libmamba=1.5.6
+  - libmambapy=1.5.6
+  - libnghttp2=1.58.0
+  - libnsl=2.0.1
+  - libopenblas=0.3.26
+  - libpng=1.6.42
+  - librsvg=2.56.3
+  - libsolv=0.7.28
+  - libsqlite=3.44.2
+  - libssh2=1.11.0
+  - libstdcxx-ng=13.2.0
+  - libtiff=4.6.0
+  - libuuid=2.38.1
+  - libwebp=1.3.2
+  - libwebp-base=1.3.2
+  - libxcb=1.15
+  - libxcrypt=4.4.36
+  - libxml2=2.12.5
+  - libzlib=1.2.13
+  - logmuse=0.2.6
+  - lz4-c=1.9.4
+  - lzo=2.10
+  - mamba=1.5.6
+  - markdown-it-py=3.0.0
+  - markupsafe=2.1.5
+  - mdurl=0.1.2
+  - menuinst=2.0.2
+  - nbformat=5.9.2
+  - ncurses=6.4
+  - numpy=1.26.4
+  - openssl=3.2.1
+  - packaging=23.2
+  - pandas=2.2.0
+  - pango=1.50.14
+  - pcre2=10.42
+  - peppy=0.40.1
+  - perl=5.32.1
+  - pip=24.0
+  - pixman=0.43.2
+  - pkgutil-resolve-name=1.3.10
+  - plac=1.4.2
+  - platformdirs=4.2.0
+  - pluggy=1.4.0
+  - psutil=5.9.8
+  - pthread-stubs=0.4
+  - pulp=2.8.0
+  - pybind11-abi=4
+  - pycosat=0.6.6
+  - pycparser=2.21
+  - pygments=2.17.2
+  - pyparsing=3.1.1
+  - pysocks=1.7.1
+  - pytest=8.0.0
+  - python=3.12.1
+  - python-dateutil=2.8.2
+  - python-fastjsonschema=2.19.1
+  - python-tzdata=2023.4
+  - python_abi=3.12
+  - pytz=2024.1
+  - pyyaml=6.0.1
+  - readline=8.2
+  - referencing=0.33.0
+  - rename=1.601
+  - reproc=14.2.4.post0
+  - reproc-cpp=14.2.4.post0
+  - requests=2.31.0
+  - reretry=0.11.8
+  - rich=13.7.0
+  - rpds-py=0.17.1
+  - ruamel.yaml=0.18.6
+  - ruamel.yaml.clib=0.2.8
+  - setuptools=69.0.3
+  - six=1.16.0
+  - slack-sdk=3.26.2
+  - slack_sdk=3.26.2
+  - smart_open=6.4.0
+  - smmap=5.0.0
+  - snakemake=8.4.6
+  - snakemake-interface-common=1.15.3
+  - snakemake-interface-executor-plugins=8.2.0
+  - snakemake-interface-storage-plugins=3.0.0
+  - snakemake-minimal=8.4.6
+  - stopit=1.1.2
+  - tabulate=0.9.0
+  - throttler=1.2.2
+  - tk=8.6.13
+  - toml=0.10.2
+  - tomli=2.0.1
+  - tomlkit=0.12.3
+  - toposort=1.10
+  - tqdm=4.66.1
+  - traitlets=5.14.1
+  - truststore=0.8.0
+  - typing_extensions=4.9.0
+  - tzdata=2024a
+  - ubiquerg=0.7.0
+  - urllib3=2.2.0
+  - veracitools=0.1.3
+  - wheel=0.42.0
+  - wrapt=1.16.0
+  - xmltodict=0.13.0
+  - xorg-kbproto=1.0.7
+  - xorg-libice=1.1.1
+  - xorg-libsm=1.2.4
+  - xorg-libx11=1.8.7
+  - xorg-libxau=1.0.11
+  - xorg-libxdmcp=1.1.3
+  - xorg-libxext=1.3.4
+  - xorg-libxrender=0.9.11
+  - xorg-renderproto=0.11.1
+  - xorg-xextproto=7.3.0
+  - xorg-xproto=7.0.31
+  - xz=5.2.6
+  - yaml=0.2.5
+  - yaml-cpp=0.8.0
+  - yq=3.2.3
+  - yte=1.5.4
+  - zipp=3.17.0
+  - zlib=1.2.13
+  - zstandard=0.22.0
+  - zstd=1.5.5
diff --git a/workflow/environments/osx/ivar_v.1.4.2.yaml b/workflow/environments/osx/ivar_v.1.4.2.yaml
index b528c08d5e02af5a10164b0e159dcfa5c5b251fc..a0463c58d3b1a0335c7df5b22225095e64292574 100644
--- a/workflow/environments/osx/ivar_v.1.4.2.yaml
+++ b/workflow/environments/osx/ivar_v.1.4.2.yaml
@@ -4,22 +4,22 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - bzip2=1.0.8=h10d778d_5
-  - c-ares=1.26.0=h10d778d_0
-  - ca-certificates=2023.11.17=h8857fd0_0
-  - htslib=1.19.1=h365c357_0
-  - ivar=1.4.2=h0546b6b_2
-  - krb5=1.21.2=hb884880_0
-  - libcurl=8.5.0=h726d00d_0
-  - libcxx=16.0.6=hd57cbcb_0
-  - libdeflate=1.18=hac1461d_0
-  - libedit=3.1.20191231=h0678c8f_2
-  - libev=4.33=h10d778d_2
-  - libnghttp2=1.58.0=h64cf6d3_1
-  - libssh2=1.11.0=hd019ec5_0
-  - libzlib=1.2.13=h8a1eda9_5
-  - ncurses=6.4=h93d8f39_2
-  - openssl=3.2.0=hd75f5a5_1
-  - samtools=1.19.2=hd510865_0
-  - xz=5.2.6=h775f41a_0
-  - zstd=1.5.5=h829000d_0
+  - bzip2=1.0.8
+  - c-ares=1.26.0
+  - ca-certificates=2023.11.17
+  - htslib=1.19.1
+  - ivar=1.4.2
+  - krb5=1.21.2
+  - libcurl=8.5.0
+  - libcxx=16.0.6
+  - libdeflate=1.18
+  - libedit=3.1.20191231
+  - libev=4.33
+  - libnghttp2=1.58.0
+  - libssh2=1.11.0
+  - libzlib=1.2.13
+  - ncurses=6.4
+  - openssl=3.2.0
+  - samtools=1.19.2
+  - xz=5.2.6
+  - zstd=1.5.5
diff --git a/workflow/environments/osx/minimap2_v.2.26.yaml b/workflow/environments/osx/minimap2_v.2.26.yaml
index 20af74334002788dc021a66988639d7467a4fde7..f860fbb207096324117eabee886ab5bd9e476c4e 100644
--- a/workflow/environments/osx/minimap2_v.2.26.yaml
+++ b/workflow/environments/osx/minimap2_v.2.26.yaml
@@ -4,8 +4,8 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - k8=0.2.5=hdf58011_4
-  - libcxx=16.0.6=hd57cbcb_0
-  - libzlib=1.2.13=h8a1eda9_5
-  - minimap2=2.26=h45fc8d7_2
-  - zlib=1.2.13=h8a1eda9_5
+  - k8=0.2.5
+  - libcxx=16.0.6
+  - libzlib=1.2.13
+  - minimap2=2.26
+  - zlib=1.2.13
diff --git a/workflow/environments/osx/multiqc_v.1.14.yaml b/workflow/environments/osx/multiqc_v.1.14.yaml
deleted file mode 100644
index bbfb80212870cd9dd48fc973316f0062f8a4eafb..0000000000000000000000000000000000000000
--- a/workflow/environments/osx/multiqc_v.1.14.yaml
+++ /dev/null
@@ -1,92 +0,0 @@
-name: multiqc_v.1.14
-channels:
-  - bioconda
-  - conda-forge
-  - defaults
-dependencies:
-  - brotli=1.0.9=hb7f2c08_8
-  - brotli-bin=1.0.9=hb7f2c08_8
-  - bzip2=1.0.8=h0d85af4_4
-  - ca-certificates=2024.2.2=h8857fd0_0
-  - certifi=2024.2.2=pyhd8ed1ab_0
-  - charset-normalizer=3.1.0=pyhd8ed1ab_0
-  - click=8.1.3=unix_pyhd8ed1ab_2
-  - coloredlogs=15.0.1=pyhd8ed1ab_3
-  - colormath=3.0.0=py_2
-  - contourpy=1.1.0=py311h5fe6e05_0
-  - cycler=0.11.0=pyhd8ed1ab_0
-  - fonttools=4.40.0=py311h2725bcf_0
-  - freetype=2.12.1=h3f81eb7_1
-  - future=0.18.3=pyhd8ed1ab_0
-  - humanfriendly=10.0=py311h6eed73b_4
-  - idna=3.4=pyhd8ed1ab_0
-  - importlib-metadata=6.7.0=pyha770c72_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - kiwisolver=1.4.4=py311hd2070f0_1
-  - lcms2=2.15=h2dcdeff_1
-  - lerc=4.0.0=hb486fe8_0
-  - libblas=3.9.0=17_osx64_openblas
-  - libbrotlicommon=1.0.9=hb7f2c08_8
-  - libbrotlidec=1.0.9=hb7f2c08_8
-  - libbrotlienc=1.0.9=hb7f2c08_8
-  - libcblas=3.9.0=17_osx64_openblas
-  - libcxx=16.0.6=hd57cbcb_0
-  - libdeflate=1.18=hac1461d_0
-  - libexpat=2.5.0=hf0c8a7f_1
-  - libffi=3.4.2=h0d85af4_5
-  - libgfortran=5.0.0=11_3_0_h97931a8_31
-  - libgfortran5=12.2.0=he409387_31
-  - libjpeg-turbo=2.1.5.1=hb7f2c08_0
-  - liblapack=3.9.0=17_osx64_openblas
-  - libopenblas=0.3.23=openmp_h429af6e_0
-  - libpng=1.6.39=ha978bb4_0
-  - libsqlite=3.42.0=h58db7d2_0
-  - libtiff=4.5.1=hf955e92_0
-  - libwebp-base=1.3.0=hb7f2c08_0
-  - libxcb=1.15=hb7f2c08_0
-  - libzlib=1.2.13=h8a1eda9_5
-  - llvm-openmp=16.0.6=hff08bdf_0
-  - lzstring=1.0.4=py_1001
-  - markdown=3.4.3=pyhd8ed1ab_0
-  - markdown-it-py=3.0.0=pyhd8ed1ab_0
-  - markupsafe=2.1.3=py311h2725bcf_0
-  - matplotlib-base=3.7.1=py311h2bf763f_0
-  - mdurl=0.1.0=pyhd8ed1ab_0
-  - multiqc=1.14=pyhdfd78af_0
-  - munkres=1.0.7=py_1
-  - ncurses=6.4=hf0c8a7f_0
-  - networkx=3.1=pyhd8ed1ab_0
-  - numpy=1.25.0=py311hc44ba51_0
-  - openjpeg=2.5.0=h13ac156_2
-  - openssl=3.2.1=hd75f5a5_0
-  - packaging=23.1=pyhd8ed1ab_0
-  - pandoc=3.1.3=h9d075a6_0
-  - pillow=9.5.0=py311h7cb0e2d_1
-  - pip=23.1.2=pyhd8ed1ab_0
-  - pthread-stubs=0.4=hc929b4f_1001
-  - pygments=2.15.1=pyhd8ed1ab_0
-  - pyparsing=3.1.0=pyhd8ed1ab_0
-  - pysocks=1.7.1=pyha2e5f31_6
-  - python=3.11.4=h30d4d87_0_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python_abi=3.11=3_cp311
-  - pyyaml=6.0=py311h5547dcb_5
-  - readline=8.2=h9e318b2_1
-  - requests=2.31.0=pyhd8ed1ab_0
-  - rich=13.4.2=pyhd8ed1ab_0
-  - rich-click=1.6.1=pyhd8ed1ab_0
-  - setuptools=67.7.2=pyhd8ed1ab_0
-  - simplejson=3.19.1=py311h5547dcb_0
-  - six=1.16.0=pyh6c4a22f_0
-  - spectra=0.0.11=py_1
-  - tk=8.6.12=h5dbffcc_0
-  - typing_extensions=4.6.3=pyha770c72_0
-  - tzdata=2023c=h71feb2d_0
-  - urllib3=2.0.3=pyhd8ed1ab_0
-  - wheel=0.40.0=pyhd8ed1ab_0
-  - xorg-libxau=1.0.11=h0dc2134_0
-  - xorg-libxdmcp=1.1.3=h35c211d_0
-  - xz=5.2.6=h775f41a_0
-  - yaml=0.2.5=h0d85af4_2
-  - zipp=3.15.0=pyhd8ed1ab_0
-  - zstd=1.5.2=hbc0c0cd_6
diff --git a/workflow/environments/osx/multiqc_v.1.19.yaml b/workflow/environments/osx/multiqc_v.1.19.yaml
index aa42bb24d8a13426a7b7be9ab9833ea121c61af7..7ce1118eb12f084fe44e72897b40818ce1029cd3 100644
--- a/workflow/environments/osx/multiqc_v.1.19.yaml
+++ b/workflow/environments/osx/multiqc_v.1.19.yaml
@@ -4,92 +4,92 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - brotli=1.1.0=h0dc2134_1
-  - brotli-bin=1.1.0=h0dc2134_1
-  - brotli-python=1.1.0=py311hdf8f085_1
-  - bzip2=1.0.8=h10d778d_5
-  - ca-certificates=2024.2.2=h8857fd0_0
-  - certifi=2024.2.2=pyhd8ed1ab_0
-  - charset-normalizer=3.3.2=pyhd8ed1ab_0
-  - click=8.1.7=unix_pyh707e725_0
-  - coloredlogs=15.0.1=pyhd8ed1ab_3
-  - colormath=3.0.0=py_2
-  - contourpy=1.2.0=py311h7bea37d_0
-  - cycler=0.12.1=pyhd8ed1ab_0
-  - fonttools=4.48.1=py311he705e18_0
-  - freetype=2.12.1=h60636b9_2
-  - future=0.18.3=pyhd8ed1ab_0
-  - humanfriendly=10.0=pyhd8ed1ab_6
-  - humanize=4.9.0=pyhd8ed1ab_0
-  - idna=3.6=pyhd8ed1ab_0
-  - importlib-metadata=7.0.1=pyha770c72_0
-  - jinja2=3.1.3=pyhd8ed1ab_0
-  - kiwisolver=1.4.5=py311h5fe6e05_1
-  - lcms2=2.16=ha2f27b4_0
-  - lerc=4.0.0=hb486fe8_0
-  - libblas=3.9.0=21_osx64_openblas
-  - libbrotlicommon=1.1.0=h0dc2134_1
-  - libbrotlidec=1.1.0=h0dc2134_1
-  - libbrotlienc=1.1.0=h0dc2134_1
-  - libcblas=3.9.0=21_osx64_openblas
-  - libcxx=16.0.6=hd57cbcb_0
-  - libdeflate=1.19=ha4e1b8e_0
-  - libexpat=2.5.0=hf0c8a7f_1
-  - libffi=3.4.2=h0d85af4_5
-  - libgfortran=5.0.0=13_2_0_h97931a8_3
-  - libgfortran5=13.2.0=h2873a65_3
-  - libjpeg-turbo=3.0.0=h0dc2134_1
-  - liblapack=3.9.0=21_osx64_openblas
-  - libopenblas=0.3.26=openmp_hfef2a42_0
-  - libpng=1.6.42=h92b6c6a_0
-  - libsqlite=3.44.2=h92b6c6a_0
-  - libtiff=4.6.0=h684deea_2
-  - libwebp-base=1.3.2=h0dc2134_0
-  - libxcb=1.15=hb7f2c08_0
-  - libzlib=1.2.13=h8a1eda9_5
-  - llvm-openmp=17.0.6=hb6ac08f_0
-  - lzstring=1.0.4=py_1001
-  - markdown=3.5.2=pyhd8ed1ab_0
-  - markdown-it-py=3.0.0=pyhd8ed1ab_0
-  - markupsafe=2.1.5=py311he705e18_0
-  - matplotlib-base=3.8.2=py311hd316c10_0
-  - mdurl=0.1.2=pyhd8ed1ab_0
-  - multiqc=1.19=pyhdfd78af_0
-  - munkres=1.0.7=py_1
-  - ncurses=6.4=h93d8f39_2
-  - networkx=3.2.1=pyhd8ed1ab_0
-  - numpy=1.26.4=py311hc43a94b_0
-  - openjpeg=2.5.0=ha4da562_3
-  - openssl=3.2.1=hd75f5a5_0
-  - packaging=23.2=pyhd8ed1ab_0
-  - pandoc=3.1.3=h9d075a6_0
-  - pillow=10.2.0=py311hea5c87a_0
-  - pip=24.0=pyhd8ed1ab_0
-  - pthread-stubs=0.4=hc929b4f_1001
-  - pyaml-env=1.1.0=pyhd8ed1ab_0
-  - pygments=2.17.2=pyhd8ed1ab_0
-  - pyparsing=3.1.1=pyhd8ed1ab_0
-  - pysocks=1.7.1=pyha2e5f31_6
-  - python=3.11.7=h9f0c242_1_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python_abi=3.11=4_cp311
-  - pyyaml=5.4.1=py311h5547dcb_4
-  - readline=8.2=h9e318b2_1
-  - requests=2.31.0=pyhd8ed1ab_0
-  - rich=13.7.0=pyhd8ed1ab_0
-  - rich-click=1.7.3=pyhd8ed1ab_0
-  - setuptools=69.0.3=pyhd8ed1ab_0
-  - simplejson=3.19.2=py311he705e18_0
-  - six=1.16.0=pyh6c4a22f_0
-  - spectra=0.0.11=py_1
-  - tk=8.6.13=h1abcd95_1
-  - typing_extensions=4.9.0=pyha770c72_0
-  - tzdata=2024a=h0c530f3_0
-  - urllib3=2.2.0=pyhd8ed1ab_0
-  - wheel=0.42.0=pyhd8ed1ab_0
-  - xorg-libxau=1.0.11=h0dc2134_0
-  - xorg-libxdmcp=1.1.3=h35c211d_0
-  - xz=5.2.6=h775f41a_0
-  - yaml=0.2.5=h0d85af4_2
-  - zipp=3.17.0=pyhd8ed1ab_0
-  - zstd=1.5.5=h829000d_0
+  - brotli=1.1.0
+  - brotli-bin=1.1.0
+  - brotli-python=1.1.0
+  - bzip2=1.0.8
+  - ca-certificates=2024.2.2
+  - certifi=2024.2.2
+  - charset-normalizer=3.3.2
+  - click=8.1.7
+  - coloredlogs=15.0.1
+  - colormath=3.0.0
+  - contourpy=1.2.0
+  - cycler=0.12.1
+  - fonttools=4.48.1
+  - freetype=2.12.1
+  - future=0.18.3
+  - humanfriendly=10.0
+  - humanize=4.9.0
+  - idna=3.6
+  - importlib-metadata=7.0.1
+  - jinja2=3.1.3
+  - kiwisolver=1.4.5
+  - lcms2=2.16
+  - lerc=4.0.0
+  - libblas=3.9.0
+  - libbrotlicommon=1.1.0
+  - libbrotlidec=1.1.0
+  - libbrotlienc=1.1.0
+  - libcblas=3.9.0
+  - libcxx=16.0.6
+  - libdeflate=1.19
+  - libexpat=2.5.0
+  - libffi=3.4.2
+  - libgfortran=5.0.0
+  - libgfortran5=13.2.0
+  - libjpeg-turbo=3.0.0
+  - liblapack=3.9.0
+  - libopenblas=0.3.26
+  - libpng=1.6.42
+  - libsqlite=3.44.2
+  - libtiff=4.6.0
+  - libwebp-base=1.3.2
+  - libxcb=1.15
+  - libzlib=1.2.13
+  - llvm-openmp=17.0.6
+  - lzstring=1.0.4
+  - markdown=3.5.2
+  - markdown-it-py=3.0.0
+  - markupsafe=2.1.5
+  - matplotlib-base=3.8.2
+  - mdurl=0.1.2
+  - multiqc=1.19
+  - munkres=1.0.7
+  - ncurses=6.4
+  - networkx=3.2.1
+  - numpy=1.26.4
+  - openjpeg=2.5.0
+  - openssl=3.2.1
+  - packaging=23.2
+  - pandoc=3.1.3
+  - pillow=10.2.0
+  - pip=24.0
+  - pthread-stubs=0.4
+  - pyaml-env=1.1.0
+  - pygments=2.17.2
+  - pyparsing=3.1.1
+  - pysocks=1.7.1
+  - python=3.11.7
+  - python-dateutil=2.8.2
+  - python_abi=3.11
+  - pyyaml=5.4.1
+  - readline=8.2
+  - requests=2.31.0
+  - rich=13.7.0
+  - rich-click=1.7.3
+  - setuptools=69.0.3
+  - simplejson=3.19.2
+  - six=1.16.0
+  - spectra=0.0.11
+  - tk=8.6.13
+  - typing_extensions=4.9.0
+  - tzdata=2024a
+  - urllib3=2.2.0
+  - wheel=0.42.0
+  - xorg-libxau=1.0.11
+  - xorg-libxdmcp=1.1.3
+  - xz=5.2.6
+  - yaml=0.2.5
+  - zipp=3.17.0
+  - zstd=1.5.5
diff --git a/workflow/environments/osx/nextclade_v.3.1.0.yaml b/workflow/environments/osx/nextclade_v.3.1.0.yaml
index 567c6c1f2f15ea6fd19437e457fa2eecc26c94bb..081eba82c6b71845e5cf87f461423be1b61c2f9d 100644
--- a/workflow/environments/osx/nextclade_v.3.1.0.yaml
+++ b/workflow/environments/osx/nextclade_v.3.1.0.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - nextclade=3.1.0=h527b516_0
+  - nextclade=3.1.0
diff --git a/workflow/environments/osx/tsv2vcf_v.1.0.yaml b/workflow/environments/osx/tsv2vcf_v.1.0.yaml
index 628d6e652be231fc9837369fb3379f499743d5bc..0568e52fb59b1acc9cecad2df4421fa54e91802c 100644
--- a/workflow/environments/osx/tsv2vcf_v.1.0.yaml
+++ b/workflow/environments/osx/tsv2vcf_v.1.0.yaml
@@ -4,45 +4,45 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bcftools=1.19=h79774e1_0
-  - biopython=1.83=py312h41838bb_0
-  - bzip2=1.0.8=h10d778d_5
-  - c-ares=1.19.1=h6c40b1e_0
-  - ca-certificates=2023.12.12=hecd8cb5_0
-  - gdbm=1.18=hdccc71a_4
-  - gsl=2.7.1=hdbe807d_1
-  - htslib=1.19.1=h365c357_0
-  - krb5=1.20.1=h428f121_1
-  - libblas=3.9.0=21_osx64_openblas
-  - libcblas=3.9.0=21_osx64_openblas
-  - libcurl=8.5.0=hf20ceda_0
-  - libcxx=16.0.6=hd57cbcb_0
-  - libdeflate=1.18=hac1461d_0
-  - libedit=3.1.20230828=h6c40b1e_0
-  - libev=4.33=h9ed2024_1
-  - libexpat=2.5.0=hf0c8a7f_1
-  - libffi=3.4.2=h0d85af4_5
-  - libgfortran=5.0.0=13_2_0_h97931a8_2
-  - libgfortran5=13.2.0=h2873a65_2
-  - liblapack=3.9.0=21_osx64_openblas
-  - libnghttp2=1.57.0=h9beae6a_0
-  - libopenblas=0.3.26=openmp_hfef2a42_0
-  - libsqlite=3.44.2=h92b6c6a_0
-  - libssh2=1.10.0=h04015c4_2
-  - libzlib=1.2.13=h8a1eda9_5
-  - llvm-openmp=17.0.6=hb6ac08f_0
-  - ncurses=6.4=h93d8f39_2
-  - numpy=1.26.3=py312he3a82b2_0
-  - openssl=3.2.1=hd75f5a5_0
-  - perl=5.34.0=h435f0c2_2
-  - pip=23.3.2=pyhd8ed1ab_0
-  - python=3.12.1=h9f0c242_1_cpython
-  - python_abi=3.12=4_cp312
-  - readline=8.2=h9e318b2_1
-  - scipy=1.12.0=py312h8adb940_2
-  - setuptools=69.0.3=pyhd8ed1ab_0
-  - tk=8.6.13=h1abcd95_1
-  - tzdata=2023d=h0c530f3_0
-  - wheel=0.42.0=pyhd8ed1ab_0
-  - xz=5.2.6=h775f41a_0
-  - zlib=1.2.13=h8a1eda9_5
+  - bcftools=1.19
+  - biopython=1.83
+  - bzip2=1.0.8
+  - c-ares=1.19.1
+  - ca-certificates=2023.12.12
+  - gdbm=1.18
+  - gsl=2.7.1
+  - htslib=1.19.1
+  - krb5=1.20.1
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libcurl=8.5.0
+  - libcxx=16.0.6
+  - libdeflate=1.18
+  - libedit=3.1.20230828
+  - libev=4.33
+  - libexpat=2.5.0
+  - libffi=3.4.2
+  - libgfortran=5.0.0
+  - libgfortran5=13.2.0
+  - liblapack=3.9.0
+  - libnghttp2=1.57.0
+  - libopenblas=0.3.26
+  - libsqlite=3.44.2
+  - libssh2=1.10.0
+  - libzlib=1.2.13
+  - llvm-openmp=17.0.6
+  - ncurses=6.4
+  - numpy=1.26.3
+  - openssl=3.2.1
+  - perl=5.34.0
+  - pip=23.3.2
+  - python=3.12.1
+  - python_abi=3.12
+  - readline=8.2
+  - scipy=1.12.0
+  - setuptools=69.0.3
+  - tk=8.6.13
+  - tzdata=2023d
+  - wheel=0.42.0
+  - xz=5.2.6
+  - zlib=1.2.13
diff --git a/workflow/environments/osx/workflow-base_v.2024.02.yaml b/workflow/environments/osx/workflow-base_v.2024.02.yaml
index fb89ef91ae6c5247f65022817af75c75e9dd95a0..fb2eccd1844a5a5536ddabf32ee245be31e8639a 100644
--- a/workflow/environments/osx/workflow-base_v.2024.02.yaml
+++ b/workflow/environments/osx/workflow-base_v.2024.02.yaml
@@ -4,192 +4,192 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - amply=0.1.6=pyhd8ed1ab_0
-  - appdirs=1.4.4=pyh9f0ad1d_0
-  - archspec=0.2.2=pyhd8ed1ab_0
-  - argcomplete=3.2.2=pyhd8ed1ab_0
-  - argparse-dataclass=2.0.0=pyhd8ed1ab_0
-  - atk-1.0=2.38.0=h1d18e73_1
-  - attmap=0.13.2=pyhd8ed1ab_0
-  - attrs=23.2.0=pyh71513ae_0
-  - boltons=23.1.1=pyhd8ed1ab_0
-  - brotli-python=1.1.0=py312heafc425_1
-  - bzip2=1.0.8=h10d778d_5
-  - c-ares=1.26.0=h10d778d_0
-  - ca-certificates=2024.2.2=h8857fd0_0
-  - cairo=1.18.0=h99e66fa_0
-  - certifi=2024.2.2=pyhd8ed1ab_0
-  - cffi=1.16.0=py312h38bf5a0_0
-  - charset-normalizer=3.3.2=pyhd8ed1ab_0
-  - coincbc=2.10.3=h7a5a08d_3
-  - colorama=0.4.6=pyhd8ed1ab_0
-  - conda=23.11.0=py312hb401068_1
-  - conda-inject=1.3.1=pyhd8ed1ab_0
-  - conda-libmamba-solver=24.1.0=pyhd8ed1ab_0
-  - conda-package-handling=2.2.0=pyh38be061_0
-  - conda-package-streaming=0.9.0=pyhd8ed1ab_0
-  - configargparse=1.7=pyhd8ed1ab_0
-  - connection_pool=0.0.3=pyhd3deb0d_0
-  - datrie=0.8.2=py312h104f124_7
-  - distro=1.9.0=pyhd8ed1ab_0
-  - docutils=0.20.1=py312hb401068_3
-  - dpath=2.1.6=pyha770c72_0
-  - eido=0.2.2=pyhd8ed1ab_0
-  - exceptiongroup=1.2.0=pyhd8ed1ab_2
-  - expat=2.5.0=hf0c8a7f_1
-  - fmt=10.2.1=h7728843_0
-  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
-  - font-ttf-inconsolata=3.000=h77eed37_0
-  - font-ttf-source-code-pro=2.038=h77eed37_0
-  - font-ttf-ubuntu=0.83=h77eed37_1
-  - fontconfig=2.14.2=h5bb23bf_0
-  - fonts-conda-ecosystem=1=0
-  - fonts-conda-forge=1=0
-  - freetype=2.12.1=h60636b9_2
-  - fribidi=1.0.10=hbcb3906_0
-  - gdk-pixbuf=2.42.10=hbb5a27d_4
-  - gettext=0.21.1=h8a4c099_0
-  - giflib=5.2.1=hb7f2c08_3
-  - gitdb=4.0.11=pyhd8ed1ab_0
-  - gitpython=3.1.41=pyhd8ed1ab_0
-  - graphite2=1.3.13=h2e338ed_1001
-  - graphviz=9.0.0=hee74176_1
-  - gtk2=2.24.33=h8ca4665_3
-  - gts=0.7.6=h53e17e3_4
-  - harfbuzz=8.3.0=hf45c392_0
-  - humanfriendly=10.0=pyhd8ed1ab_6
-  - icu=73.2=hf5e326d_0
-  - idna=3.6=pyhd8ed1ab_0
-  - immutables=0.20=py312h104f124_1
-  - importlib_resources=6.1.1=pyhd8ed1ab_0
-  - iniconfig=2.0.0=pyhd8ed1ab_0
-  - jinja2=3.1.3=pyhd8ed1ab_0
-  - jq=1.5=0
-  - jsonpatch=1.33=pyhd8ed1ab_0
-  - jsonpointer=2.4=py312hb401068_3
-  - jsonschema=4.21.1=pyhd8ed1ab_0
-  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
-  - jupyter_core=5.7.1=py312hb401068_0
-  - krb5=1.21.2=hb884880_0
-  - lerc=4.0.0=hb486fe8_0
-  - libarchive=3.7.2=hd35d340_1
-  - libblas=3.9.0=15_osx64_openblas
-  - libcblas=3.9.0=15_osx64_openblas
-  - libcurl=8.5.0=h726d00d_0
-  - libcxx=16.0.6=hd57cbcb_0
-  - libdeflate=1.19=ha4e1b8e_0
-  - libedit=3.1.20191231=h0678c8f_2
-  - libev=4.33=h10d778d_2
-  - libexpat=2.5.0=hf0c8a7f_1
-  - libffi=3.4.2=h0d85af4_5
-  - libgcc=4.8.5=hdbeacc1_10
-  - libgd=2.3.3=h0dceb68_9
-  - libgfortran=3.0.1=0
-  - libglib=2.78.3=h198397b_0
-  - libiconv=1.17=hd75f5a5_2
-  - libjpeg-turbo=3.0.0=h0dc2134_1
-  - liblapack=3.9.0=15_osx64_openblas
-  - libmamba=1.5.6=ha449628_0
-  - libmambapy=1.5.6=py312h67f5953_0
-  - libnghttp2=1.58.0=h64cf6d3_1
-  - libopenblas=0.3.20=h9a5756b_0
-  - libpng=1.6.42=h92b6c6a_0
-  - librsvg=2.56.3=h1877882_1
-  - libsolv=0.7.28=h2d185b6_0
-  - libsqlite=3.44.2=h92b6c6a_0
-  - libssh2=1.11.0=hd019ec5_0
-  - libtiff=4.6.0=h684deea_2
-  - libwebp=1.3.2=h44782d1_1
-  - libwebp-base=1.3.2=h0dc2134_0
-  - libxml2=2.12.5=hc0ae0f7_0
-  - libzlib=1.2.13=h8a1eda9_5
-  - logmuse=0.2.6=pyh8c360ce_0
-  - lz4-c=1.9.4=hf0c8a7f_0
-  - lzo=2.10=haf1e3a3_1000
-  - mamba=1.5.6=py312ha12221d_0
-  - markdown-it-py=3.0.0=pyhd8ed1ab_0
-  - markupsafe=2.1.5=py312h41838bb_0
-  - mdurl=0.1.2=pyhd8ed1ab_0
-  - menuinst=2.0.2=py312hb401068_0
-  - nbformat=5.9.2=pyhd8ed1ab_0
-  - ncurses=6.4=h93d8f39_2
-  - numpy=1.26.4=py312he3a82b2_0
-  - openssl=3.2.1=hd75f5a5_0
-  - packaging=23.2=pyhd8ed1ab_0
-  - pandas=2.2.0=py312h83c8a23_0
-  - pango=1.50.14=h19c1c8a_2
-  - pcre2=10.42=h0ad2156_0
-  - peppy=0.40.1=pyhd8ed1ab_0
-  - perl=5.32.1=7_h10d778d_perl5
-  - pip=24.0=pyhd8ed1ab_0
-  - pixman=0.43.2=h73e2aa4_0
-  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
-  - plac=1.4.2=pyhd8ed1ab_0
-  - platformdirs=4.2.0=pyhd8ed1ab_0
-  - pluggy=1.4.0=pyhd8ed1ab_0
-  - psutil=5.9.8=py312h41838bb_0
-  - pulp=2.8.0=py312hb401068_0
-  - pybind11-abi=4=hd8ed1ab_3
-  - pycosat=0.6.6=py312h104f124_0
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pygments=2.17.2=pyhd8ed1ab_0
-  - pyparsing=3.1.1=pyhd8ed1ab_0
-  - pysocks=1.7.1=pyha2e5f31_6
-  - pytest=8.0.0=pyhd8ed1ab_0
-  - python=3.12.1=h9f0c242_1_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python-fastjsonschema=2.19.1=pyhd8ed1ab_0
-  - python-tzdata=2023.4=pyhd8ed1ab_0
-  - python_abi=3.12=4_cp312
-  - pytz=2024.1=pyhd8ed1ab_0
-  - pyyaml=6.0.1=py312h104f124_1
-  - readline=8.2=h9e318b2_1
-  - referencing=0.33.0=pyhd8ed1ab_0
-  - rename=1.601=hdfd78af_1
-  - reproc=14.2.4.post0=h10d778d_1
-  - reproc-cpp=14.2.4.post0=h93d8f39_1
-  - requests=2.31.0=pyhd8ed1ab_0
-  - reretry=0.11.8=pyhd8ed1ab_0
-  - rich=13.7.0=pyhd8ed1ab_0
-  - rpds-py=0.17.1=py312h6e28e45_0
-  - ruamel.yaml=0.18.6=py312h41838bb_0
-  - ruamel.yaml.clib=0.2.7=py312h104f124_2
-  - setuptools=69.0.3=pyhd8ed1ab_0
-  - six=1.16.0=pyh6c4a22f_0
-  - slack-sdk=3.26.2=pyha770c72_0
-  - slack_sdk=3.26.2=hd8ed1ab_0
-  - smart_open=6.4.0=pyhd8ed1ab_0
-  - smmap=5.0.0=pyhd8ed1ab_0
-  - snakemake=8.4.6=hdfd78af_0
-  - snakemake-interface-common=1.15.3=pyhdfd78af_0
-  - snakemake-interface-executor-plugins=8.2.0=pyhdfd78af_0
-  - snakemake-interface-storage-plugins=3.0.0=pyhdfd78af_0
-  - snakemake-minimal=8.4.6=pyhdfd78af_0
-  - stopit=1.1.2=py_0
-  - tabulate=0.9.0=pyhd8ed1ab_1
-  - throttler=1.2.2=pyhd8ed1ab_0
-  - tk=8.6.13=h1abcd95_1
-  - toml=0.10.2=pyhd8ed1ab_0
-  - tomli=2.0.1=pyhd8ed1ab_0
-  - tomlkit=0.12.3=pyha770c72_0
-  - toposort=1.10=pyhd8ed1ab_0
-  - tqdm=4.66.1=pyhd8ed1ab_0
-  - traitlets=5.14.1=pyhd8ed1ab_0
-  - truststore=0.8.0=pyhd8ed1ab_0
-  - typing_extensions=4.9.0=pyha770c72_0
-  - tzdata=2024a=h0c530f3_0
-  - ubiquerg=0.7.0=pyhd8ed1ab_0
-  - urllib3=2.2.0=pyhd8ed1ab_0
-  - veracitools=0.1.3=py_0
-  - wheel=0.42.0=pyhd8ed1ab_0
-  - wrapt=1.16.0=py312h41838bb_0
-  - xmltodict=0.13.0=pyhd8ed1ab_0
-  - xz=5.2.6=h775f41a_0
-  - yaml=0.2.5=h0d85af4_2
-  - yaml-cpp=0.8.0=he965462_0
-  - yq=3.2.3=pyhd8ed1ab_0
-  - yte=1.5.4=pyha770c72_0
-  - zipp=3.17.0=pyhd8ed1ab_0
-  - zlib=1.2.13=h8a1eda9_5
-  - zstandard=0.22.0=py312h7a629f7_0
-  - zstd=1.5.5=h829000d_0
+  - amply=0.1.6
+  - appdirs=1.4.4
+  - archspec=0.2.2
+  - argcomplete=3.2.2
+  - argparse-dataclass=2.0.0
+  - atk-1.0=2.38.0
+  - attmap=0.13.2
+  - attrs=23.2.0
+  - boltons=23.1.1
+  - brotli-python=1.1.0
+  - bzip2=1.0.8
+  - c-ares=1.26.0
+  - ca-certificates=2024.2.2
+  - cairo=1.18.0
+  - certifi=2024.2.2
+  - cffi=1.16.0
+  - charset-normalizer=3.3.2
+  - coincbc=2.10.3
+  - colorama=0.4.6
+  - conda=23.11.0
+  - conda-inject=1.3.1
+  - conda-libmamba-solver=24.1.0
+  - conda-package-handling=2.2.0
+  - conda-package-streaming=0.9.0
+  - configargparse=1.7
+  - connection_pool=0.0.3
+  - datrie=0.8.2
+  - distro=1.9.0
+  - docutils=0.20.1
+  - dpath=2.1.6
+  - eido=0.2.2
+  - exceptiongroup=1.2.0
+  - expat=2.5.0
+  - fmt=10.2.1
+  - font-ttf-dejavu-sans-mono=2.37
+  - font-ttf-inconsolata=3.000
+  - font-ttf-source-code-pro=2.038
+  - font-ttf-ubuntu=0.83
+  - fontconfig=2.14.2
+  - fonts-conda-ecosystem=1
+  - fonts-conda-forge=1
+  - freetype=2.12.1
+  - fribidi=1.0.10
+  - gdk-pixbuf=2.42.10
+  - gettext=0.21.1
+  - giflib=5.2.1
+  - gitdb=4.0.11
+  - gitpython=3.1.41
+  - graphite2=1.3.13
+  - graphviz=9.0.0
+  - gtk2=2.24.33
+  - gts=0.7.6
+  - harfbuzz=8.3.0
+  - humanfriendly=10.0
+  - icu=73.2
+  - idna=3.6
+  - immutables=0.20
+  - importlib_resources=6.1.1
+  - iniconfig=2.0.0
+  - jinja2=3.1.3
+  - jq=1.5
+  - jsonpatch=1.33
+  - jsonpointer=2.4
+  - jsonschema=4.21.1
+  - jsonschema-specifications=2023.12.1
+  - jupyter_core=5.7.1
+  - krb5=1.21.2
+  - lerc=4.0.0
+  - libarchive=3.7.2
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libcurl=8.5.0
+  - libcxx=16.0.6
+  - libdeflate=1.19
+  - libedit=3.1.20191231
+  - libev=4.33
+  - libexpat=2.5.0
+  - libffi=3.4.2
+  - libgcc=4.8.5
+  - libgd=2.3.3
+  - libgfortran=3.0.1
+  - libglib=2.78.3
+  - libiconv=1.17
+  - libjpeg-turbo=3.0.0
+  - liblapack=3.9.0
+  - libmamba=1.5.6
+  - libmambapy=1.5.6
+  - libnghttp2=1.58.0
+  - libopenblas=0.3.20
+  - libpng=1.6.42
+  - librsvg=2.56.3
+  - libsolv=0.7.28
+  - libsqlite=3.44.2
+  - libssh2=1.11.0
+  - libtiff=4.6.0
+  - libwebp=1.3.2
+  - libwebp-base=1.3.2
+  - libxml2=2.12.5
+  - libzlib=1.2.13
+  - logmuse=0.2.6
+  - lz4-c=1.9.4
+  - lzo=2.10
+  - mamba=1.5.6
+  - markdown-it-py=3.0.0
+  - markupsafe=2.1.5
+  - mdurl=0.1.2
+  - menuinst=2.0.2
+  - nbformat=5.9.2
+  - ncurses=6.4
+  - numpy=1.26.4
+  - openssl=3.2.1
+  - packaging=23.2
+  - pandas=2.2.0
+  - pango=1.50.14
+  - pcre2=10.42
+  - peppy=0.40.1
+  - perl=5.32.1
+  - pip=24.0
+  - pixman=0.43.2
+  - pkgutil-resolve-name=1.3.10
+  - plac=1.4.2
+  - platformdirs=4.2.0
+  - pluggy=1.4.0
+  - psutil=5.9.8
+  - pulp=2.8.0
+  - pybind11-abi=4
+  - pycosat=0.6.6
+  - pycparser=2.21
+  - pygments=2.17.2
+  - pyparsing=3.1.1
+  - pysocks=1.7.1
+  - pytest=8.0.0
+  - python=3.12.1
+  - python-dateutil=2.8.2
+  - python-fastjsonschema=2.19.1
+  - python-tzdata=2023.4
+  - python_abi=3.12
+  - pytz=2024.1
+  - pyyaml=6.0.1
+  - readline=8.2
+  - referencing=0.33.0
+  - rename=1.601
+  - reproc=14.2.4.post0
+  - reproc-cpp=14.2.4.post0
+  - requests=2.31.0
+  - reretry=0.11.8
+  - rich=13.7.0
+  - rpds-py=0.17.1
+  - ruamel.yaml=0.18.6
+  - ruamel.yaml.clib=0.2.7
+  - setuptools=69.0.3
+  - six=1.16.0
+  - slack-sdk=3.26.2
+  - slack_sdk=3.26.2
+  - smart_open=6.4.0
+  - smmap=5.0.0
+  - snakemake=8.4.6
+  - snakemake-interface-common=1.15.3
+  - snakemake-interface-executor-plugins=8.2.0
+  - snakemake-interface-storage-plugins=3.0.0
+  - snakemake-minimal=8.4.6
+  - stopit=1.1.2
+  - tabulate=0.9.0
+  - throttler=1.2.2
+  - tk=8.6.13
+  - toml=0.10.2
+  - tomli=2.0.1
+  - tomlkit=0.12.3
+  - toposort=1.10
+  - tqdm=4.66.1
+  - traitlets=5.14.1
+  - truststore=0.8.0
+  - typing_extensions=4.9.0
+  - tzdata=2024a
+  - ubiquerg=0.7.0
+  - urllib3=2.2.0
+  - veracitools=0.1.3
+  - wheel=0.42.0
+  - wrapt=1.16.0
+  - xmltodict=0.13.0
+  - xz=5.2.6
+  - yaml=0.2.5
+  - yaml-cpp=0.8.0
+  - yq=3.2.3
+  - yte=1.5.4
+  - zipp=3.17.0
+  - zlib=1.2.13
+  - zstandard=0.22.0
+  - zstd=1.5.5