only singularity in
Hello Seb.
I have included snakecdysis into my ikiss package but install is not working in cluster_mode. I'm having this error in useful_function.py", line 71.
(base) [jorjuela@core-login2 iKISS]$ ikiss install_cluster -s slurm
diade/iKISS
Welcome to iKISS version: 1.2.0 !
@author: Julie Orjuela (IRD)
@email: julie.orjuela@ird.fr
Please cite our git: https://forge.ird.fr/diade/iKISS
Licenced under MIT
Intellectual property belongs to IRD and authors.
Choose mode for tools dependencies (modules, singularity) [modules]: singularity
Traceback (most recent call last):
File "/shared/home/jorjuela/.local/bin/ikiss", line 8, in <module>
sys.exit(main())
File "/shared/home/jorjuela/.local/lib/python3.9/site-packages/click/core.py", line 1128, in __call__
return self.main(*args, **kwargs)
File "/shared/home/jorjuela/.local/lib/python3.9/site-packages/click/core.py", line 1053, in main
rv = self.invoke(ctx)
File "/shared/home/jorjuela/.local/lib/python3.9/site-packages/click/core.py", line 1659, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/shared/home/jorjuela/.local/lib/python3.9/site-packages/snakecdysis/useful_function.py", line 71, in invoke
require = ctx.params[require_name]
KeyError: 'create_envmodule'
(base) [jorjuela@core-login2 iKISS]$ ikiss install_cluster -s slurm -e singularity
diade/iKISS
Could you please fix it? Thanks
Edited by julie.orjuela_ird.fr