From b027e5f7c65e833943f6f4245919b285b3116b34 Mon Sep 17 00:00:00 2001
From: thdurand4 <91953714+thdurand4@users.noreply.github.com>
Date: Tue, 7 Jun 2022 13:42:08 +0200
Subject: [PATCH] Add files via upload
---
cluster_config_SLURM.yaml | 95 +++++++++++++++++++++++++++++++++++++++
1 file changed, 95 insertions(+)
create mode 100644 cluster_config_SLURM.yaml
diff --git a/cluster_config_SLURM.yaml b/cluster_config_SLURM.yaml
new file mode 100644
index 0000000..1f045d5
--- /dev/null
+++ b/cluster_config_SLURM.yaml
@@ -0,0 +1,95 @@
+__default__:
+ cpus-per-task : 4
+ mem-per-cpu : 10G
+ partition : long
+ output : 'slurm_logs/stdout/{rule}/{wildcards}.o'
+ error : 'slurm_logs/error/{rule}/{wildcards}.e'
+ job-name : '{rule}.{wildcards}'
+
+
+rename_protein:
+ cpus-per-task: 1
+ partition: fast
+
+phobius:
+ cpus-per-task: 5
+ mem-per-cpu: 10G
+ partition: fast
+
+signalP:
+ cpus-per-task: 10
+ mem-per-cpu: 10G
+ partition: fast
+
+targetp:
+ cpus-per-task: 10
+ mem-per-cpu: 10G
+ partition: fast
+
+predgpi:
+ cpus-per-task: 10
+ mem-per-cpu: 10G
+ partition: fast
+
+parse_phobius:
+ cpus-per-task: 1
+ partition: fast
+
+parse_signalp:
+ cpus-per-task: 1
+ partition: fast
+
+parse_targetp:
+ cpus-per-task: 1
+ partition: fast
+
+parse_predgpi:
+ cpus-per-task: 1
+ partition: fast
+
+intersect_tools:
+ cpus-per-task: 1
+ partition: fast
+
+fasta_intersect:
+ cpus-per-task: 1
+ partition: fast
+
+tmhmm:
+ cpus-per-task: 5
+ partition: fast
+
+parse_tmhmm:
+ cpus-per-task: 1
+ partition: fast
+
+tmhmm_fasta:
+ cpus-per-task: 1
+ partition: fast
+
+wolfpsort:
+ cpus-per-task: 10
+ mem-per-cpu: 10G
+ partition: fast
+
+parse_wolfpsort:
+ cpus-per-task: 1
+ partition: fast
+
+id_tofasta_secreted:
+ cpus-per-task: 1
+ partition: fast
+
+hmmer_pfam:
+ cpus-per-task: 8
+ mem-per-cpu: 5G
+ partition: fast
+
+effectorP:
+ cpus-per-task: 10
+ mem-per-cpu: 10G
+ partition: fast
+
+count_effector:
+ cpus-per-task: 1
+ partition: fast
--
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