diff --git a/cluster_config_SLURM.yaml b/cluster_config_SLURM.yaml new file mode 100644 index 0000000000000000000000000000000000000000..1f045d507ef77fe27a9f335f5ee2bb7fd962b76f --- /dev/null +++ b/cluster_config_SLURM.yaml @@ -0,0 +1,95 @@ +__default__: + cpus-per-task : 4 + mem-per-cpu : 10G + partition : long + output : 'slurm_logs/stdout/{rule}/{wildcards}.o' + error : 'slurm_logs/error/{rule}/{wildcards}.e' + job-name : '{rule}.{wildcards}' + + +rename_protein: + cpus-per-task: 1 + partition: fast + +phobius: + cpus-per-task: 5 + mem-per-cpu: 10G + partition: fast + +signalP: + cpus-per-task: 10 + mem-per-cpu: 10G + partition: fast + +targetp: + cpus-per-task: 10 + mem-per-cpu: 10G + partition: fast + +predgpi: + cpus-per-task: 10 + mem-per-cpu: 10G + partition: fast + +parse_phobius: + cpus-per-task: 1 + partition: fast + +parse_signalp: + cpus-per-task: 1 + partition: fast + +parse_targetp: + cpus-per-task: 1 + partition: fast + +parse_predgpi: + cpus-per-task: 1 + partition: fast + +intersect_tools: + cpus-per-task: 1 + partition: fast + +fasta_intersect: + cpus-per-task: 1 + partition: fast + +tmhmm: + cpus-per-task: 5 + partition: fast + +parse_tmhmm: + cpus-per-task: 1 + partition: fast + +tmhmm_fasta: + cpus-per-task: 1 + partition: fast + +wolfpsort: + cpus-per-task: 10 + mem-per-cpu: 10G + partition: fast + +parse_wolfpsort: + cpus-per-task: 1 + partition: fast + +id_tofasta_secreted: + cpus-per-task: 1 + partition: fast + +hmmer_pfam: + cpus-per-task: 8 + mem-per-cpu: 5G + partition: fast + +effectorP: + cpus-per-task: 10 + mem-per-cpu: 10G + partition: fast + +count_effector: + cpus-per-task: 1 + partition: fast