From 8c8829dd7821717ca0b92e9d0f2d73edd4dcac04 Mon Sep 17 00:00:00 2001
From: "julie.orjuela" <julie.orjuela@ird.fr>
Date: Fri, 8 Mar 2024 18:40:00 +0100
Subject: [PATCH] minors doc installation part into README

---
 README.md | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index f52166c..af6656e 100644
--- a/README.md
+++ b/README.md
@@ -71,7 +71,7 @@ In local mode, it's possible to allocate threads to some rules using `--set-thre
 
 ### 2.2 Running your data in CLUSTER mode
 
-Now you can launch suggested command line done by RNAja in `cluster` mode BUT before  you need to configurate cluster parameters running command line 'RNAja edit_cluster_config' before the first run and modify threads, ram, node and computer resources.
+Now you can launch suggested command line done by RNAja in `cluster` mode BUT before  you need to configurate cluster parameters running command line `RNAja edit_cluster_config` before the first run and modify threads, ram, node and computer resources.
 RNAja does a copy of `cluster_config.yaml` file into your home `"/home/$USER/.config/rnaja_pipeline/cluster_config.yaml"`
 
 ```bash
@@ -86,13 +86,13 @@ If singularity was selected in installation of RNAja, it could be needed to give
    RNAja run_cluster -c TEST/data_test_config.yaml --singularity-args "--bind $HOME"
    
    # here a example adapted to @IFB HPC
-   #RNAja run_cluster -c TEST/data_test_config.yaml --singularity-args "--bind /shared:/shared"
+   RNAja run_cluster -c TEST/data_test_config.yaml --singularity-args "--bind /shared:/shared"
    
    #you can also use snakemake parameters as 
-   #RNAja run_cluster -c TEST/data_test_config.yaml --singularity-args "--bind $HOME" --rerun-incomplete --nolock
+   RNAja run_cluster -c TEST/data_test_config.yaml --singularity-args "--bind $HOME" --rerun-incomplete --nolock
 ```
 
-**Important Note** : In i-Trop cluster, run RNAja using ONLY a node, data has to be in "/scratch" of chosen node. Use `nodelist : nodeX` parameter inside of `cluster_config.yaml`Ì€ file.
+**Important Note** : In IRD "i-Trop" cluster, run RNAja using ONLY a node, data has to be in "/scratch" of chosen node. Use `nodelist : nodeX` parameter inside of `cluster_config.yaml`Ì€ file.
 
 -----------------------
 ### Authors
@@ -107,7 +107,7 @@ Some parts of RNAja code and documentation were inspired or came from the pipeli
 
 - BulkRNA (Camille Cohen) https://github.com/CamilleCohen/ProjetTuteur-_BulkRNA
 
-RNAja uses SnakEcdysis package https://snakecdysis.readthedocs.io/en/latest/package.html to perform installation and execution in local and cluster mode developed by Sébastien Ravel (CIRAD).
+RNAja uses really nice python package **SnakEcdysis** https://snakecdysis.readthedocs.io/en/latest/package.html to perform installation and execution in local and cluster mode. SnakEcdysis is developed by Sébastien Ravel (CIRAD).
 
 -----------------------
 ## Acknowledgements
-- 
GitLab