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GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.

UX for AKaDO

https://akador.ob7.ird.fr

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

LiDAR data voxelisation package

Shiny app is an interactive Exploratory Data Analysis (EDA) tool

Link: https://viznshine.ob7.ird.fr

This repository contains a proof of concept (POC) demonstrating how to host R Shiny applications as static web apps using Quarto and Shinylive on GitLab Pages. https://mivegec.pages.ird.fr/dainat/shinylive_quarto

Example of Shiny app static working on single CPU at client-side https://mivegec.pages.ird.fr/dainat/shinylive 🎉

This Shiny application, part of the GlobalTunaAtlas project, is designed to facilitate the exploration and analysis of worldwide tuna fisheries data.