Ghana-Installation-software.md

@@ -327,6 +327,34 @@ Add /usr/local/bioinfo/GeneMark-ES-4.38 to the path :
           Choose a tool in /usr/local/bioinfo/GeneMark-ES-4.38/gmes_petap
            tool + arguments
 
+
+# htslib:
+
+C library for high-throughput sequencing data formats
+
+URL: https://github.com/samtools/htslib
+
+
+
+
+### Installation:
+
+        git clone https://github.com/samtools/htslib.git
+        cd htslib
+       autoheader
+       autoconf
+      ./configure --prefix=/usr/local/bioinfo/htslib-1.9
+      make
+      make install
+
+
+Add /usr/local/bioinfo/htslib-1.9 to the path :
+
+       echo  'export PATH=/usr/local/bioinfo/htslib-1.9:$PATH' >>/etc/profile
+       
+       source /etc/profile
+
+
 # Samtools:
 
 Tools (written in C using htslib) for manipulating next-generation sequencing data