Ghana-Installation-software.md

@@ -721,15 +721,20 @@ Description: RepeatMasker is a program that screens DNA sequences for interspers
 
 URL: http://www.repeatmasker.org/RMDownload.html
 
-
+Dependencies: trf: https://tandem.bu.edu/trf/trf409.linux64.download.html
+rmblast: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/rmblast/2.2.28
+  
 ### Installation:
 
              wget   http://www.repeatmasker.org/RepeatMasker-open-4-0-8.tar.gz
              tar xvfz RepeatMasker-open-4.0.8.tar.gz -C /usr/local/bioinfo
+             mv /usr/local/bioinfo/RepeatMasker /usr/local/bioinfo/RepeatMasker-4.0.8
              cd /usr/local/bioinfo/RepeatMasker
              wget https://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/RepBaseRepeatMaskerEdition-20181026.tar.gz 
              tar xvfz RepBaseRepeatMaskerEdition-20181026.tar.gz  
-             perl ./configure
+             ./configure
+
+Then follow the indications
    
   
       
@@ -871,7 +876,7 @@ URL: http://eugene.toulouse.inra.fr/
 
 ### Installation:
              
-             yum install -y gd-devel
+             yum install -y gd-devel texlive-latex-bin-bin-svn14050.0-43.20130427_r30134.el7.noarch
              wget http://eugene.toulouse.inra.fr/Downloads/eugene-4.2a.tar.gz
              tar xvfz eugene-4.2a.tar.gz
              cd eugene-4.2a