Ghana-Installation-software.md

@@ -768,3 +768,54 @@ Add this variable to the path :
            
        EMBOSS +  arguments     
 
+
+# Wise2:
+
+Description: Wise2 has four main executable programs using sequence inputs which are designed to provide access to the main algorithms sensibly. The algorithms you are interested in is genewise - compare protein information to genomic DNA and estwise - compare protein information to EST/cDNA DNA
+
+URL: https://www.ebi.ac.uk/~birney/wise2/
+
+
+### Installation:
+
+             yum install glib glib-devel
+             cd /usr/local/
+             wget https://www.ebi.ac.uk/~birney/wise2/wise2.4.1.tar.gz
+             tar xvfz wise2.4.1.tar.gz
+             cd wise2.4.1/src
+             
+  Edit the  Makefile in wise2.4.A/src and modify line 25 :
+
+             From 'CC= cc' to 'CC= gcc'
+
+  Edit the Makefile  in wise2.4.1/src/dyc and modify the line 26:          
+  
+             From 'CC= cc' to 'CC= gcc'
+
+  Edit the file src/models/phasemodels.c and modify yhe line 23:
+
+             From !isnumber(line[0]) ) {' à 'if( !isdigit(line[0]) ) {'
+
+  In the folder src/dyc, launch the command:
+
+
+              make linux
+              cd ..
+
+  In src/, launch the command:
+
+              make all
+             
+Add this variable to the path :
+
+       echo  'export PATH=/usr/local/bioinfo/wise2.4.1/bin:$PATH' >>/etc/profile
+       source /etc/profile
+
+
+### Usage:
+            
+       Check the binaries available in /usr/local/bioinfo/wise2.4.1/bin    
+       Launch  tools +  arguments     
+
+
+