Ghana-Installation-software.md

@@ -946,3 +946,36 @@ Add this variable to the path :
             
       Check the binaries in /usr/local/bioinfo/ncbi-tools-20170106/   
       tools +  arguments 
+
+# prinseq-lite:
+
+Description:  PRINSEQ can be used to filter, reformat, or trim your genomic and metagenomic sequence data.
+
+URL: http://prinseq.sourceforge.net/
+
+
+### Installation:
+            
+            cpan Getopt::Long
+            cpan Pod::Usage
+            cpan File::Temp
+            cpan Fcntl
+            cpan Cwd
+            cpan JSON
+            cd /usr/local 
+            tar xvfz prinseq-lite-0.20.4.tar.gz 
+            
+                        
+  
+      
+
+Add this variable to the path :
+
+       echo  'export PATH=/usr/local/bioinfo/prinseq-lite-0.20.4/:$PATH' >>/etc/profile
+       
+       source /etc/profile
+
+
+### Usage:
+            
+      perl prinseq-lite.pl [options]