Ghana-Installation-software.md

@@ -549,6 +549,37 @@ Add this variable to the path :
 
 ### Usage:
           
-            look at the scripts in /usr/local/bioinfo/SPADES-3.10.1/bin
-            python script + arguments
+            look at the scripts in /usr/local/bioinfo/abyss-2.1.5/bin
+            tool + arguments
            
+# Repeatcout:
+
+Description: The purpose of the RepeatScout software is to identify repeat family
+sequences from genomes where hand-curated repeat databases (a la
+RepBase update) are not available.
+
+
+URL: https://github.com/mmcco/RepeatScout
+
+
+### Installation:
+
+                     
+            wget http://bix.ucsd.edu/repeatscout/RepeatScout-1.0.5.tar.gz
+            tar xvfz RepeatScout-1.0.5.tar.gz -C /usr/local/bioinfo
+            cd /usr/local/bioinfo/RepeatScout-1.0.5
+            make
+
+      
+
+Add this variable to the path :
+
+       echo  'export PATH=/usr/local/bioinfo/RepeatScout-1.0.5/:$PATH' >>/etc/profile
+       
+
+       source /etc/profile
+
+
+### Usage:
+          
+            RepeatScout + arguments
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