Ghana-Installation-software.md

@@ -211,3 +211,32 @@ Dependencies: python3
 
            cutadapt + arguments
 
+
+
+# hmmer:
+
+HMMER: biosequence analysis using profile hidden Markov models
+
+URL: http://hmmer.org/
+
+
+### Installation:
+
+         wget http://eddylab.org/software/hmmer/hmmer.tar.gz
+         tar xvfz hmmer.tar.gz 
+         cd hmmer-3.2.1
+         ./configure --prefix=/usr/local/bioinfo/hmmer-3.2.1
+         make 
+         make install
+         cd easel
+         make install
+                 
+Add /usr/local/bioinfo/hmmer-3.2.1 to the path :
+
+       echo  'export PATH=/usr/local/bioinfo/hmmer-3.2.1/bin:$PATH' >>/etc/profile
+       echo  'export LD_LIBRARY_PATH=/usr/local/bioinfo/hmmer-3.2.1/lib:$LD_LIBRARY_PATH' >>/etc/profile
+       source /etc/profile
+
+### Usage:
+          Choose a tool in /usr/local/bioinfo/hmmer-3.2.1/bin
+           tool + arguments