Ghana-Installation-software.md

@@ -962,7 +962,7 @@ URL: http://prinseq.sourceforge.net/
             cpan Fcntl
             cpan Cwd
             cpan JSON
-            cd /usr/local 
+            cd /usr/local/bioinfo 
             tar xvfz prinseq-lite-0.20.4.tar.gz 
             
                         
@@ -979,3 +979,34 @@ Add this variable to the path :
 ### Usage:
             
       perl prinseq-lite.pl [options]
+
+# PILER:
+
+Description:  PILER is public domain software for analyzing repetitive DNA found in genome sequences.
+
+URL: http://www.drive5.com/piler/
+
+
+### Installation:
+            
+             mkdir /usr/local/bioinfo/piler-1.0            
+             cd /usr/local/bioinfo/piler-1.0      
+             wget  http://www.drive5.com/piler/piler_source.tar.gz
+             tar xvfz piler_source.tar.gz 
+             make all
+            
+                        
+  
+      
+
+Add this variable to the path :
+
+       echo  'export PATH=/usr/local/bioinfo/piler-1.0/:$PATH' >>/etc/profile
+       
+       source /etc/profile
+
+
+### Usage:
+            
+      piler2 + arguments
+