Ghana-Installation-software.md

@@ -298,3 +298,31 @@ Modify the config.ini file with:
           
            python3 /usr/local/bioinfo/busco-3.0.2/busco/scripts/run_BUSCP.py + arguments
            tool + arguments
+
+
+# GeneMark-ES:
+
+A family of gene prediction programs
+URL: http://exon.gatech.edu/GeneMark/
+
+
+
+### Installation:
+
+         wget http://topaz.gatech.edu/GeneMark/tmp/GMtool_pQkU_/gm_et_linux_64.tar.gz
+         wget http://topaz.gatech.edu/GeneMark/tmp/GMtool_pQkU_/gm_key_64.gz
+         tar xvfz gm_et_linux_64.tar.gz 
+         mv gm_et_linux_64 GeneMark-ES-4.38
+         cp -r GeneMark-ES-4.38 /usr/local/bioinfo
+
+         
+                 
+Add /usr/local/bioinfo/GeneMark-ES-4.38 to the path :
+
+       echo  'export PATH=/usr/local/bioinfo/GeneMark-ES-4.38/gmes_petap:$PATH' >>/etc/profile
+       
+       source /etc/profile
+
+### Usage:
+          Choose a tool in /usr/local/bioinfo/GeneMark-ES-4.38/gmes_petap
+           tool + arguments