diff --git a/frangiPANe/snakefiles/bwa_mem.smk b/frangiPANe/snakefiles/bwa_mem.smk index 299ca46b30472c86c005ab0142eed61b66c16837..db8d83ca58bf7ec12dd3fc0a605b41ebc1dab20f 100644 --- a/frangiPANe/snakefiles/bwa_mem.smk +++ b/frangiPANe/snakefiles/bwa_mem.smk @@ -14,7 +14,7 @@ rule bwa_mem: rg = f"@RG\\tID:{{sample_name}}\\tSM:{{sample_name}}\\tPL:Illumina", other_options_bwaMem = frangipane_obj.get_config_value("PARAMS","bwa_mem"), other_options_samtoolsSort = frangipane_obj.get_config_value("PARAMS","samtools_sort") - threads: get_threads('bwa_mem', 1) + threads: get_threads('bwa_mem', 2) message: f"""-------------------- -Running {{rule}} diff --git a/frangiPANe/snakefiles/samtools_view.smk b/frangiPANe/snakefiles/samtools_view.smk index 28c1518c728c2a55d7346006cc84d54a5299028d..afb9c37c2e4406c89daf870e43219f86525033aa 100644 --- a/frangiPANe/snakefiles/samtools_view.smk +++ b/frangiPANe/snakefiles/samtools_view.smk @@ -10,7 +10,7 @@ rule samtools_view: output = f"{frangipane_obj.path_logs}/samtools_view/{{sample_name}}-{{ref_name}}.o" params: other_options = frangipane_obj.get_config_value("PARAMS","samtools_view"), - threads: get_threads('samtools_view', 1) + threads: get_threads('samtools_view', 2) message: f"""-------------------- -Running {{rule}}