diff --git a/frangiPANe/generate_stats.py b/frangiPANe/generate_stats.py
index dc4cd74e7a1b1cf95225b498601fbb131bf7192a..4bfd222febad2834ca4f1a04e7b6483852075fe3 100644
--- a/frangiPANe/generate_stats.py
+++ b/frangiPANe/generate_stats.py
@@ -11,6 +11,7 @@ import panel as pn
import pandas as pd
import seaborn as sns
+import param
#todecomment for final version
import warnings
@@ -156,8 +157,10 @@ def dashboard_group(df):
# seaborn box plot for the chosen animal
def box_view(self):
data = df
- plt.figure() # figsize=(4, 3))
- ax = sns.countplot(y=data['Species'], palette="hls")
+ plt.figure(figsize=(4, 3))
+ #ax = sns.countplot(y=data['Species'], palette="hls")
+ ax = sns.countplot(y=data['Species'], hue=data['Species'], palette="hls", legend=False)
+
plt.close()
return ax.figure
@@ -186,14 +189,13 @@ def dashboard_group(df):
pn.Row(stat, rd.box_view), # box plot
rd.param,
pn.Row(rd.table_view, scroll=True, width=800, height=400), # data table
- sizing_mode='stretch_both', background='WhiteSmoke', scroll=True
- )
+ sizing_mode='stretch_both', scroll=True, styles={'background': 'WhiteSmoke'})
# show the dashboard with the data embedded ,
# (for using in an html download of the notebook so that
# no 'callback' is required from the browser to get the data)
dashboard.embed()
-
+ #display(dashboard)
def dashboard_fastq(csv, total_size, group_file, output_dir):
diff --git a/frangiPANe/report/frangiPANe_report.ipynb b/frangiPANe/report/frangiPANe_report.ipynb
index 02b992aa30699010eb59eae0f64b47f2142b88b0..3cf61e309ac139860c5925068ee84b666a63069e 100644
--- a/frangiPANe/report/frangiPANe_report.ipynb
+++ b/frangiPANe/report/frangiPANe_report.ipynb
@@ -16,11 +16,14 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
- "print(out_dir, ref_file, vec_file, group_file, fastq_dir) #,cpus)"
+ "#print(out_dir, ref_file, vec_file, group_file, fastq_dir) #,cpus)\n",
+ "group_file = '/home/christine/Dev-test/data_test/rice_group.txt'\n",
+ "ref_png = '/home/christine/Dev-test/rice-output/04-stats/04-plots/00_ref.png'\n",
+ "ref_csv = '/home/christine/Dev-test/rice-output/04-stats/04-summary/00_ref.txt'\n"
]
},
{
@@ -36,16 +39,742 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 2,
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "data": {
+ "application/javascript": [
+ "(function(root) {\n",
+ " function now() {\n",
+ " return new Date();\n",
+ " }\n",
+ "\n",
+ " var force = true;\n",
+ " var py_version = '3.3.2'.replace('rc', '-rc.').replace('.dev', '-dev.');\n",
+ " var reloading = false;\n",
+ " var Bokeh = root.Bokeh;\n",
+ "\n",
+ " if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n",
+ " root._bokeh_timeout = Date.now() + 5000;\n",
+ " root._bokeh_failed_load = false;\n",
+ " }\n",
+ "\n",
+ " function run_callbacks() {\n",
+ " try {\n",
+ " root._bokeh_onload_callbacks.forEach(function(callback) {\n",
+ " if (callback != null)\n",
+ " callback();\n",
+ " });\n",
+ " } finally {\n",
+ " delete root._bokeh_onload_callbacks;\n",
+ " }\n",
+ " console.debug(\"Bokeh: all callbacks have finished\");\n",
+ " }\n",
+ "\n",
+ " function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n",
+ " if (css_urls == null) css_urls = [];\n",
+ " if (js_urls == null) js_urls = [];\n",
+ " if (js_modules == null) js_modules = [];\n",
+ " if (js_exports == null) js_exports = {};\n",
+ "\n",
+ " root._bokeh_onload_callbacks.push(callback);\n",
+ "\n",
+ " if (root._bokeh_is_loading > 0) {\n",
+ " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
+ " return null;\n",
+ " }\n",
+ " if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n",
+ " run_callbacks();\n",
+ " return null;\n",
+ " }\n",
+ " if (!reloading) {\n",
+ " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
+ " }\n",
+ "\n",
+ " function on_load() {\n",
+ " root._bokeh_is_loading--;\n",
+ " if (root._bokeh_is_loading === 0) {\n",
+ " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
+ " run_callbacks()\n",
+ " }\n",
+ " }\n",
+ " window._bokeh_on_load = on_load\n",
+ "\n",
+ " function on_error() {\n",
+ " console.error(\"failed to load \" + url);\n",
+ " }\n",
+ "\n",
+ " var skip = [];\n",
+ " if (window.requirejs) {\n",
+ " window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n",
+ " require([\"jspanel\"], function(jsPanel) {\n",
+ "\twindow.jsPanel = jsPanel\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-modal\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-tooltip\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-hint\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-layout\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-contextmenu\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-dock\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"gridstack\"], function(GridStack) {\n",
+ "\twindow.GridStack = GridStack\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"notyf\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " root._bokeh_is_loading = css_urls.length + 9;\n",
+ " } else {\n",
+ " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n",
+ " }\n",
+ "\n",
+ " var existing_stylesheets = []\n",
+ " var links = document.getElementsByTagName('link')\n",
+ " for (var i = 0; i < links.length; i++) {\n",
+ " var link = links[i]\n",
+ " if (link.href != null) {\n",
+ "\texisting_stylesheets.push(link.href)\n",
+ " }\n",
+ " }\n",
+ " for (var i = 0; i < css_urls.length; i++) {\n",
+ " var url = css_urls[i];\n",
+ " if (existing_stylesheets.indexOf(url) !== -1) {\n",
+ "\ton_load()\n",
+ "\tcontinue;\n",
+ " }\n",
+ " const element = document.createElement(\"link\");\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.rel = \"stylesheet\";\n",
+ " element.type = \"text/css\";\n",
+ " element.href = url;\n",
+ " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
+ " document.body.appendChild(element);\n",
+ " } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n",
+ " var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n",
+ " for (var i = 0; i < urls.length; i++) {\n",
+ " skip.push(urls[i])\n",
+ " }\n",
+ " } if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n",
+ " var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n",
+ " for (var i = 0; i < urls.length; i++) {\n",
+ " skip.push(urls[i])\n",
+ " }\n",
+ " } if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n",
+ " var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n",
+ " for (var i = 0; i < urls.length; i++) {\n",
+ " skip.push(urls[i])\n",
+ " }\n",
+ " } var existing_scripts = []\n",
+ " var scripts = document.getElementsByTagName('script')\n",
+ " for (var i = 0; i < scripts.length; i++) {\n",
+ " var script = scripts[i]\n",
+ " if (script.src != null) {\n",
+ "\texisting_scripts.push(script.src)\n",
+ " }\n",
+ " }\n",
+ " for (var i = 0; i < js_urls.length; i++) {\n",
+ " var url = js_urls[i];\n",
+ " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n",
+ "\tif (!window.requirejs) {\n",
+ "\t on_load();\n",
+ "\t}\n",
+ "\tcontinue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (var i = 0; i < js_modules.length; i++) {\n",
+ " var url = js_modules[i];\n",
+ " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n",
+ "\tif (!window.requirejs) {\n",
+ "\t on_load();\n",
+ "\t}\n",
+ "\tcontinue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (const name in js_exports) {\n",
+ " var url = js_exports[name];\n",
+ " if (skip.indexOf(url) >= 0 || root[name] != null) {\n",
+ "\tif (!window.requirejs) {\n",
+ "\t on_load();\n",
+ "\t}\n",
+ "\tcontinue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " element.textContent = `\n",
+ " import ${name} from \"${url}\"\n",
+ " window.${name} = ${name}\n",
+ " window._bokeh_on_load()\n",
+ " `\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " if (!js_urls.length && !js_modules.length) {\n",
+ " on_load()\n",
+ " }\n",
+ " };\n",
+ "\n",
+ " function inject_raw_css(css) {\n",
+ " const element = document.createElement(\"style\");\n",
+ " element.appendChild(document.createTextNode(css));\n",
+ " document.body.appendChild(element);\n",
+ " }\n",
+ "\n",
+ " var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.3.2.min.js\", \"https://cdn.holoviz.org/panel/1.3.5/dist/panel.min.js\"];\n",
+ " var js_modules = [];\n",
+ " var js_exports = {};\n",
+ " var css_urls = [];\n",
+ " var inline_js = [ function(Bokeh) {\n",
+ " Bokeh.set_log_level(\"info\");\n",
+ " },\n",
+ "function(Bokeh) {} // ensure no trailing comma for IE\n",
+ " ];\n",
+ "\n",
+ " function run_inline_js() {\n",
+ " if ((root.Bokeh !== undefined) || (force === true)) {\n",
+ " for (var i = 0; i < inline_js.length; i++) {\n",
+ "\ttry {\n",
+ " inline_js[i].call(root, root.Bokeh);\n",
+ "\t} catch(e) {\n",
+ "\t if (!reloading) {\n",
+ "\t throw e;\n",
+ "\t }\n",
+ "\t}\n",
+ " }\n",
+ " // Cache old bokeh versions\n",
+ " if (Bokeh != undefined && !reloading) {\n",
+ "\tvar NewBokeh = root.Bokeh;\n",
+ "\tif (Bokeh.versions === undefined) {\n",
+ "\t Bokeh.versions = new Map();\n",
+ "\t}\n",
+ "\tif (NewBokeh.version !== Bokeh.version) {\n",
+ "\t Bokeh.versions.set(NewBokeh.version, NewBokeh)\n",
+ "\t}\n",
+ "\troot.Bokeh = Bokeh;\n",
+ " }} else if (Date.now() < root._bokeh_timeout) {\n",
+ " setTimeout(run_inline_js, 100);\n",
+ " } else if (!root._bokeh_failed_load) {\n",
+ " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
+ " root._bokeh_failed_load = true;\n",
+ " }\n",
+ " root._bokeh_is_initializing = false\n",
+ " }\n",
+ "\n",
+ " function load_or_wait() {\n",
+ " // Implement a backoff loop that tries to ensure we do not load multiple\n",
+ " // versions of Bokeh and its dependencies at the same time.\n",
+ " // In recent versions we use the root._bokeh_is_initializing flag\n",
+ " // to determine whether there is an ongoing attempt to initialize\n",
+ " // bokeh, however for backward compatibility we also try to ensure\n",
+ " // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n",
+ " // before older versions are fully initialized.\n",
+ " if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n",
+ " root._bokeh_is_initializing = false;\n",
+ " root._bokeh_onload_callbacks = undefined;\n",
+ " console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n",
+ " load_or_wait();\n",
+ " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n",
+ " setTimeout(load_or_wait, 100);\n",
+ " } else {\n",
+ " root._bokeh_is_initializing = true\n",
+ " root._bokeh_onload_callbacks = []\n",
+ " var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n",
+ " if (!reloading && !bokeh_loaded) {\n",
+ "\troot.Bokeh = undefined;\n",
+ " }\n",
+ " load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n",
+ "\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
+ "\trun_inline_js();\n",
+ " });\n",
+ " }\n",
+ " }\n",
+ " // Give older versions of the autoload script a head-start to ensure\n",
+ " // they initialize before we start loading newer version.\n",
+ " setTimeout(load_or_wait, 100)\n",
+ "}(window));"
+ ],
+ "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n var force = true;\n var py_version = '3.3.2'.replace('rc', '-rc.').replace('.dev', '-dev.');\n var reloading = false;\n var Bokeh = root.Bokeh;\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n run_callbacks();\n return null;\n }\n if (!reloading) {\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error() {\n console.error(\"failed to load \" + url);\n }\n\n var skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n require([\"jspanel\"], function(jsPanel) {\n\twindow.jsPanel = jsPanel\n\ton_load()\n })\n require([\"jspanel-modal\"], function() {\n\ton_load()\n })\n require([\"jspanel-tooltip\"], function() {\n\ton_load()\n })\n require([\"jspanel-hint\"], function() {\n\ton_load()\n })\n require([\"jspanel-layout\"], function() {\n\ton_load()\n })\n require([\"jspanel-contextmenu\"], function() {\n\ton_load()\n })\n require([\"jspanel-dock\"], function() {\n\ton_load()\n })\n require([\"gridstack\"], function(GridStack) {\n\twindow.GridStack = GridStack\n\ton_load()\n })\n require([\"notyf\"], function() {\n\ton_load()\n })\n root._bokeh_is_loading = css_urls.length + 9;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n var existing_stylesheets = []\n var links = document.getElementsByTagName('link')\n for (var i = 0; i < links.length; i++) {\n var link = links[i]\n if (link.href != null) {\n\texisting_stylesheets.push(link.href)\n }\n }\n for (var i = 0; i < css_urls.length; i++) {\n var url = css_urls[i];\n if (existing_stylesheets.indexOf(url) !== -1) {\n\ton_load()\n\tcontinue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } var existing_scripts = []\n var scripts = document.getElementsByTagName('script')\n for (var i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n\texisting_scripts.push(script.src)\n }\n }\n for (var i = 0; i < js_urls.length; i++) {\n var url = js_urls[i];\n if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (var i = 0; i < js_modules.length; i++) {\n var url = js_modules[i];\n if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n var url = js_exports[name];\n if (skip.indexOf(url) >= 0 || root[name] != null) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.3.2.min.js\", \"https://cdn.holoviz.org/panel/1.3.5/dist/panel.min.js\"];\n var js_modules = [];\n var js_exports = {};\n var css_urls = [];\n var inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (var i = 0; i < inline_js.length; i++) {\n\ttry {\n inline_js[i].call(root, root.Bokeh);\n\t} catch(e) {\n\t if (!reloading) {\n\t throw e;\n\t }\n\t}\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n\tvar NewBokeh = root.Bokeh;\n\tif (Bokeh.versions === undefined) {\n\t Bokeh.versions = new Map();\n\t}\n\tif (NewBokeh.version !== Bokeh.version) {\n\t Bokeh.versions.set(NewBokeh.version, NewBokeh)\n\t}\n\troot.Bokeh = Bokeh;\n }} else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n\troot.Bokeh = undefined;\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n\trun_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));"
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
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+ "\n",
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+ "}\n",
+ "\n",
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+ " }\n",
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+ " if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
+ " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
+ " comm_manager.register_target(comm_id, function(comm) {\n",
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+ " });\n",
+ " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
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+ " });\n",
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+ " return window.PyViz.comms[comm_id];\n",
+ " } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
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+ " var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n",
+ " if (msg_handler) {\n",
+ " comm.on_msg(msg_handler);\n",
+ " }\n",
+ " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
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+ " comm.open();\n",
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+ " comm.onMsg = msg_handler;\n",
+ " }\n",
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+ " var comm_promise = google.colab.kernel.comms.open(comm_id)\n",
+ " comm_promise.then((comm) => {\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " if (msg_handler) {\n",
+ " var messages = comm.messages[Symbol.asyncIterator]();\n",
+ " function processIteratorResult(result) {\n",
+ " var message = result.value;\n",
+ " var content = {data: message.data};\n",
+ " var metadata = message.metadata || {comm_id};\n",
+ " var msg = {content, metadata}\n",
+ " msg_handler(msg);\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " }) \n",
+ " var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
+ " return comm_promise.then((comm) => {\n",
+ " comm.send(data, metadata, buffers, disposeOnDone);\n",
+ " });\n",
+ " };\n",
+ " var comm = {\n",
+ " send: sendClosure\n",
+ " };\n",
+ " }\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " return comm;\n",
+ " }\n",
+ " window.PyViz.comm_manager = new JupyterCommManager();\n",
+ " \n",
+ "\n",
+ "\n",
+ "var JS_MIME_TYPE = 'application/javascript';\n",
+ "var HTML_MIME_TYPE = 'text/html';\n",
+ "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
+ "var CLASS_NAME = 'output';\n",
+ "\n",
+ "/**\n",
+ " * Render data to the DOM node\n",
+ " */\n",
+ "function render(props, node) {\n",
+ " var div = document.createElement(\"div\");\n",
+ " var script = document.createElement(\"script\");\n",
+ " node.appendChild(div);\n",
+ " node.appendChild(script);\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when a new output is added\n",
+ " */\n",
+ "function handle_add_output(event, handle) {\n",
+ " var output_area = handle.output_area;\n",
+ " var output = handle.output;\n",
+ " if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
+ " return\n",
+ " }\n",
+ " var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
+ " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
+ " if (id !== undefined) {\n",
+ " var nchildren = toinsert.length;\n",
+ " var html_node = toinsert[nchildren-1].children[0];\n",
+ " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var scripts = [];\n",
+ " var nodelist = html_node.querySelectorAll(\"script\");\n",
+ " for (var i in nodelist) {\n",
+ " if (nodelist.hasOwnProperty(i)) {\n",
+ " scripts.push(nodelist[i])\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " scripts.forEach( function (oldScript) {\n",
+ " var newScript = document.createElement(\"script\");\n",
+ " var attrs = [];\n",
+ " var nodemap = oldScript.attributes;\n",
+ " for (var j in nodemap) {\n",
+ " if (nodemap.hasOwnProperty(j)) {\n",
+ " attrs.push(nodemap[j])\n",
+ " }\n",
+ " }\n",
+ " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
+ " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
+ " oldScript.parentNode.replaceChild(newScript, oldScript);\n",
+ " });\n",
+ " if (JS_MIME_TYPE in output.data) {\n",
+ " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
+ " }\n",
+ " output_area._hv_plot_id = id;\n",
+ " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
+ " window.PyViz.plot_index[id] = Bokeh.index[id];\n",
+ " } else {\n",
+ " window.PyViz.plot_index[id] = null;\n",
+ " }\n",
+ " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
+ " var bk_div = document.createElement(\"div\");\n",
+ " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var script_attrs = bk_div.children[0].attributes;\n",
+ " for (var i = 0; i < script_attrs.length; i++) {\n",
+ " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
+ " }\n",
+ " // store reference to server id on output_area\n",
+ " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when an output is cleared or removed\n",
+ " */\n",
+ "function handle_clear_output(event, handle) {\n",
+ " var id = handle.cell.output_area._hv_plot_id;\n",
+ " var server_id = handle.cell.output_area._bokeh_server_id;\n",
+ " if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
+ " var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
+ " if (server_id !== null) {\n",
+ " comm.send({event_type: 'server_delete', 'id': server_id});\n",
+ " return;\n",
+ " } else if (comm !== null) {\n",
+ " comm.send({event_type: 'delete', 'id': id});\n",
+ " }\n",
+ " delete PyViz.plot_index[id];\n",
+ " if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
+ " var doc = window.Bokeh.index[id].model.document\n",
+ " doc.clear();\n",
+ " const i = window.Bokeh.documents.indexOf(doc);\n",
+ " if (i > -1) {\n",
+ " window.Bokeh.documents.splice(i, 1);\n",
+ " }\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle kernel restart event\n",
+ " */\n",
+ "function handle_kernel_cleanup(event, handle) {\n",
+ " delete PyViz.comms[\"hv-extension-comm\"];\n",
+ " window.PyViz.plot_index = {}\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle update_display_data messages\n",
+ " */\n",
+ "function handle_update_output(event, handle) {\n",
+ " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
+ " handle_add_output(event, handle)\n",
+ "}\n",
+ "\n",
+ "function register_renderer(events, OutputArea) {\n",
+ " function append_mime(data, metadata, element) {\n",
+ " // create a DOM node to render to\n",
+ " var toinsert = this.create_output_subarea(\n",
+ " metadata,\n",
+ " CLASS_NAME,\n",
+ " EXEC_MIME_TYPE\n",
+ " );\n",
+ " this.keyboard_manager.register_events(toinsert);\n",
+ " // Render to node\n",
+ " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
+ " render(props, toinsert[0]);\n",
+ " element.append(toinsert);\n",
+ " return toinsert\n",
+ " }\n",
+ "\n",
+ " events.on('output_added.OutputArea', handle_add_output);\n",
+ " events.on('output_updated.OutputArea', handle_update_output);\n",
+ " events.on('clear_output.CodeCell', handle_clear_output);\n",
+ " events.on('delete.Cell', handle_clear_output);\n",
+ " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
+ "\n",
+ " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
+ " safe: true,\n",
+ " index: 0\n",
+ " });\n",
+ "}\n",
+ "\n",
+ "if (window.Jupyter !== undefined) {\n",
+ " try {\n",
+ " var events = require('base/js/events');\n",
+ " var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
+ " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
+ " register_renderer(events, OutputArea);\n",
+ " }\n",
+ " } catch(err) {\n",
+ " }\n",
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" 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400px));\\n}\",{\"id\":\"013f8ae2-7e2c-4849-99a6-892b15385520\"},{\"type\":\"object\",\"name\":\"ImportedStyleSheet\",\"id\":\"4ec3d8b7-aef4-471c-88be-dc6df590d689\",\"attributes\":{\"url\":\"https://cdn.holoviz.org/panel/1.3.5/dist/css/dataframe.css\"}},{\"id\":\"3d015457-647e-48f2-b586-2272bbdbb7f7\"},{\"id\":\"7654205e-ca28-4b5f-bc47-f88597e3d10c\"}],\"margin\":[5,10],\"align\":\"start\",\"text\":\"<table class="dataframe panel-df">\\n <thead>\\n <tr style="text-align: right;">\\n <th></th>\\n <th>chr</th>\\n <th>start</th>\\n <th>size</th>\\n <th>id</th>\\n <th>type</th>\\n </tr>\\n </thead>\\n <tbody>\\n <tr>\\n <th>0</th>\\n <td>Chr01</td>\\n <td>0</td>\\n <td>39656874</td>\\n <td>Chr01</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>1</th>\\n <td>Chr02</td>\\n <td>0</td>\\n <td>34451705</td>\\n <td>Chr02</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>2</th>\\n <td>Chr03</td>\\n <td>0</td>\\n <td>35526803</td>\\n <td>Chr03</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>3</th>\\n <td>Chr04</td>\\n <td>0</td>\\n <td>31572833</td>\\n <td>Chr04</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>4</th>\\n <td>Chr05</td>\\n <td>0</td>\\n <td>26274044</td>\\n <td>Chr05</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>5</th>\\n <td>Chr06</td>\\n <td>0</td>\\n <td>29275207</td>\\n <td>Chr06</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>6</th>\\n <td>Chr07</td>\\n <td>0</td>\\n <td>26599613</td>\\n <td>Chr07</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>7</th>\\n <td>Chr08</td>\\n <td>0</td>\\n <td>25472746</td>\\n <td>Chr08</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>8</th>\\n <td>Chr09</td>\\n <td>0</td>\\n <td>21796210</td>\\n <td>Chr09</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>9</th>\\n <td>Chr10</td>\\n <td>0</td>\\n <td>22418183</td>\\n <td>Chr10</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>10</th>\\n <td>Chr11</td>\\n <td>0</td>\\n <td>26393633</td>\\n <td>Chr11</td>\\n <td>gvar</td>\\n </tr>\\n <tr>\\n <th>11</th>\\n <td>Chr12</td>\\n <td>0</td>\\n <td>25020142</td>\\n <td>Chr12</td>\\n <td>gvar</td>\\n </tr>\\n </tbody>\\n</table>\",\"disable_math\":true}}]}}]}},{\"type\":\"object\",\"name\":\"panel.models.comm_manager.CommManager\",\"id\":\"f340f601-3500-4dde-bd47-1e4bd18dd1ba\",\"attributes\":{\"plot_id\":\"0e3f4dd4-966b-4877-9548-dbee6873ab8d\",\"comm_id\":\"26ba2093a0c64e9cbd8f7a62f255727d\",\"client_comm_id\":\"379e3cbb93e6486e99f566d00a913d85\"}}],\"defs\":[{\"type\":\"model\",\"name\":\"ReactiveHTML1\"},{\"type\":\"model\",\"name\":\"FlexBox1\",\"properties\":[{\"name\":\"align_content\",\"kind\":\"Any\",\"default\":\"flex-start\"},{\"name\":\"align_items\",\"kind\":\"Any\",\"default\":\"flex-start\"},{\"name\":\"flex_direction\",\"kind\":\"Any\",\"default\":\"row\"},{\"name\":\"flex_wrap\",\"kind\":\"Any\",\"default\":\"wrap\"},{\"name\":\"justify_content\",\"kind\":\"Any\",\"default\":\"flex-start\"}]},{\"type\":\"model\",\"name\":\"FloatPanel1\",\"properties\":[{\"name\":\"config\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"contained\",\"kind\":\"Any\",\"default\":true},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"right-top\"},{\"name\":\"offsetx\",\"kind\":\"Any\",\"default\":null},{\"name\":\"offsety\",\"kind\":\"Any\",\"default\":null},{\"name\":\"theme\",\"kind\":\"Any\",\"default\":\"primary\"},{\"name\":\"status\",\"kind\":\"Any\",\"default\":\"normalized\"}]},{\"type\":\"model\",\"name\":\"GridStack1\",\"properties\":[{\"name\":\"mode\",\"kind\":\"Any\",\"default\":\"warn\"},{\"name\":\"ncols\",\"kind\":\"Any\",\"default\":null},{\"name\":\"nrows\",\"kind\":\"Any\",\"default\":null},{\"name\":\"allow_resize\",\"kind\":\"Any\",\"default\":true},{\"name\":\"allow_drag\",\"kind\":\"Any\",\"default\":true},{\"name\":\"state\",\"kind\":\"Any\",\"default\":[]}]},{\"type\":\"model\",\"name\":\"drag1\",\"properties\":[{\"name\":\"slider_width\",\"kind\":\"Any\",\"default\":5},{\"name\":\"slider_color\",\"kind\":\"Any\",\"default\":\"black\"},{\"name\":\"value\",\"kind\":\"Any\",\"default\":50}]},{\"type\":\"model\",\"name\":\"click1\",\"properties\":[{\"name\":\"terminal_output\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"debug_name\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"clears\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"copy_to_clipboard1\",\"properties\":[{\"name\":\"fill\",\"kind\":\"Any\",\"default\":\"none\"},{\"name\":\"value\",\"kind\":\"Any\",\"default\":null}]},{\"type\":\"model\",\"name\":\"FastWrapper1\",\"properties\":[{\"name\":\"object\",\"kind\":\"Any\",\"default\":null},{\"name\":\"style\",\"kind\":\"Any\",\"default\":null}]},{\"type\":\"model\",\"name\":\"NotificationAreaBase1\",\"properties\":[{\"name\":\"js_events\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"bottom-right\"},{\"name\":\"_clear\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"NotificationArea1\",\"properties\":[{\"name\":\"js_events\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"notifications\",\"kind\":\"Any\",\"default\":[]},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"bottom-right\"},{\"name\":\"_clear\",\"kind\":\"Any\",\"default\":0},{\"name\":\"types\",\"kind\":\"Any\",\"default\":[{\"type\":\"map\",\"entries\":[[\"type\",\"warning\"],[\"background\",\"#ffc107\"],[\"icon\",{\"type\":\"map\",\"entries\":[[\"className\",\"fas fa-exclamation-triangle\"],[\"tagName\",\"i\"],[\"color\",\"white\"]]}]]},{\"type\":\"map\",\"entries\":[[\"type\",\"info\"],[\"background\",\"#007bff\"],[\"icon\",{\"type\":\"map\",\"entries\":[[\"className\",\"fas fa-info-circle\"],[\"tagName\",\"i\"],[\"color\",\"white\"]]}]]}]}]},{\"type\":\"model\",\"name\":\"Notification\",\"properties\":[{\"name\":\"background\",\"kind\":\"Any\",\"default\":null},{\"name\":\"duration\",\"kind\":\"Any\",\"default\":3000},{\"name\":\"icon\",\"kind\":\"Any\",\"default\":null},{\"name\":\"message\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"notification_type\",\"kind\":\"Any\",\"default\":null},{\"name\":\"_destroyed\",\"kind\":\"Any\",\"default\":false}]},{\"type\":\"model\",\"name\":\"TemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"BootstrapTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"MaterialTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]}]}};\n",
+ " var render_items = [{\"docid\":\"ae951da3-6f79-4960-a2b9-5f039293cb8f\",\"roots\":{\"0e3f4dd4-966b-4877-9548-dbee6873ab8d\":\"e5146c47-69dc-43e5-b9a3-d8df407b6161\"},\"root_ids\":[\"0e3f4dd4-966b-4877-9548-dbee6873ab8d\"]}];\n",
+ " var docs = Object.values(docs_json)\n",
+ " if (!docs) {\n",
+ " return\n",
+ " }\n",
+ " const py_version = docs[0].version.replace('rc', '-rc.').replace('.dev', '-dev.')\n",
+ " function embed_document(root) {\n",
+ " var Bokeh = get_bokeh(root)\n",
+ " Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
+ " for (const render_item of render_items) {\n",
+ " for (const root_id of render_item.root_ids) {\n",
+ "\tconst id_el = document.getElementById(root_id)\n",
+ "\tif (id_el.children.length && (id_el.children[0].className === 'bk-root')) {\n",
+ "\t const root_el = id_el.children[0]\n",
+ "\t root_el.id = root_el.id + '-rendered'\n",
+ "\t}\n",
+ " }\n",
+ " }\n",
+ " }\n",
+ " function get_bokeh(root) {\n",
+ " if (root.Bokeh === undefined) {\n",
+ " return null\n",
+ " } else if (root.Bokeh.version !== py_version) {\n",
+ " if (root.Bokeh.versions === undefined || !root.Bokeh.versions.has(py_version)) {\n",
+ "\treturn null\n",
+ " }\n",
+ " return root.Bokeh.versions.get(py_version);\n",
+ " } else if (root.Bokeh.version === py_version) {\n",
+ " return root.Bokeh\n",
+ " }\n",
+ " return null\n",
+ " }\n",
+ " function is_loaded(root) {\n",
+ " var Bokeh = get_bokeh(root)\n",
+ " return (Bokeh != null && Bokeh.Panel !== undefined)\n",
+ " }\n",
+ " if (is_loaded(root)) {\n",
+ " embed_document(root);\n",
+ " } else {\n",
+ " var attempts = 0;\n",
+ " var timer = setInterval(function(root) {\n",
+ " if (is_loaded(root)) {\n",
+ " clearInterval(timer);\n",
+ " embed_document(root);\n",
+ " } else if (document.readyState == \"complete\") {\n",
+ " attempts++;\n",
+ " if (attempts > 200) {\n",
+ " clearInterval(timer);\n",
+ "\t var Bokeh = get_bokeh(root)\n",
+ "\t if (Bokeh == null || Bokeh.Panel == null) {\n",
+ " console.warn(\"Panel: ERROR: Unable to run Panel code because Bokeh or Panel library is missing\");\n",
+ "\t } else {\n",
+ "\t console.warn(\"Panel: WARNING: Attempting to render but not all required libraries could be resolved.\")\n",
+ "\t embed_document(root)\n",
+ "\t }\n",
+ " }\n",
+ " }\n",
+ " }, 25, root)\n",
+ " }\n",
+ "})(window);</script>"
+ ],
+ "text/plain": [
+ "Column(sizing_mode='stretch_both')\n",
+ " [0] Markdown(str)\n",
+ " [1] Markdown(str)\n",
+ " [2] Row\n",
+ " [0] PNG(str)\n",
+ " [1] DataFrame(DataFrame, styles={'background': '...})"
+ ]
+ },
+ "metadata": {
+ "application/vnd.holoviews_exec.v0+json": {
+ "id": "0e3f4dd4-966b-4877-9548-dbee6873ab8d"
+ }
+ },
+ "output_type": "display_data"
+ }
+ ],
"source": [
- "#from pathlib import Path\n",
- "import sys\n",
- "\n",
- "sys.path.append(\"/home/christine/Documents/Dev/frangiPANe_snake/workflow\")\n",
- "from scripts import generate_stats as gs\n",
- "gs.dashboard_genome2(\"400\",png,csv)"
+ "from frangiPANe import generate_stats as gs\n",
+ "from frangiPANe.snakemake_scripts import frangiPANe\n",
+ "gs.dashboard_genome2(\"400\",ref_png,ref_csv)"
]
},
{
@@ -57,28 +786,749 @@
},
{
"cell_type": "code",
- "execution_count": 1,
+ "execution_count": 6,
"metadata": {},
"outputs": [
{
- "ename": "NameError",
- "evalue": "name 'read_group_file' is not defined",
- "output_type": "error",
- "traceback": [
- "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
- "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
- "\u001b[0;32m<ipython-input-1-e7c314ec7bb8>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[0;31m# Reading group file\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m \u001b[0mid_dict\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mdf_group\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mread_group_file\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mgroup_file\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalue\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0mlogger\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 3\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 4\u001b[0m \u001b[0;31m# Group file dashboard\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 5\u001b[0m \u001b[0mdashboard_group\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdf_group\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;31mNameError\u001b[0m: name 'read_group_file' is not defined"
- ]
+ "data": {
+ "application/javascript": [
+ "(function(root) {\n",
+ " function now() {\n",
+ " return new Date();\n",
+ " }\n",
+ "\n",
+ " var force = true;\n",
+ " var py_version = '3.3.2'.replace('rc', '-rc.').replace('.dev', '-dev.');\n",
+ " var reloading = false;\n",
+ " var Bokeh = root.Bokeh;\n",
+ "\n",
+ " if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n",
+ " root._bokeh_timeout = Date.now() + 5000;\n",
+ " root._bokeh_failed_load = false;\n",
+ " }\n",
+ "\n",
+ " function run_callbacks() {\n",
+ " try {\n",
+ " root._bokeh_onload_callbacks.forEach(function(callback) {\n",
+ " if (callback != null)\n",
+ " callback();\n",
+ " });\n",
+ " } finally {\n",
+ " delete root._bokeh_onload_callbacks;\n",
+ " }\n",
+ " console.debug(\"Bokeh: all callbacks have finished\");\n",
+ " }\n",
+ "\n",
+ " function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n",
+ " if (css_urls == null) css_urls = [];\n",
+ " if (js_urls == null) js_urls = [];\n",
+ " if (js_modules == null) js_modules = [];\n",
+ " if (js_exports == null) js_exports = {};\n",
+ "\n",
+ " root._bokeh_onload_callbacks.push(callback);\n",
+ "\n",
+ " if (root._bokeh_is_loading > 0) {\n",
+ " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
+ " return null;\n",
+ " }\n",
+ " if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n",
+ " run_callbacks();\n",
+ " return null;\n",
+ " }\n",
+ " if (!reloading) {\n",
+ " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
+ " }\n",
+ "\n",
+ " function on_load() {\n",
+ " root._bokeh_is_loading--;\n",
+ " if (root._bokeh_is_loading === 0) {\n",
+ " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
+ " run_callbacks()\n",
+ " }\n",
+ " }\n",
+ " window._bokeh_on_load = on_load\n",
+ "\n",
+ " function on_error() {\n",
+ " console.error(\"failed to load \" + url);\n",
+ " }\n",
+ "\n",
+ " var skip = [];\n",
+ " if (window.requirejs) {\n",
+ " window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n",
+ " require([\"jspanel\"], function(jsPanel) {\n",
+ "\twindow.jsPanel = jsPanel\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-modal\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-tooltip\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-hint\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-layout\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-contextmenu\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"jspanel-dock\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"gridstack\"], function(GridStack) {\n",
+ "\twindow.GridStack = GridStack\n",
+ "\ton_load()\n",
+ " })\n",
+ " require([\"notyf\"], function() {\n",
+ "\ton_load()\n",
+ " })\n",
+ " root._bokeh_is_loading = css_urls.length + 9;\n",
+ " } else {\n",
+ " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n",
+ " }\n",
+ "\n",
+ " var existing_stylesheets = []\n",
+ " var links = document.getElementsByTagName('link')\n",
+ " for (var i = 0; i < links.length; i++) {\n",
+ " var link = links[i]\n",
+ " if (link.href != null) {\n",
+ "\texisting_stylesheets.push(link.href)\n",
+ " }\n",
+ " }\n",
+ " for (var i = 0; i < css_urls.length; i++) {\n",
+ " var url = css_urls[i];\n",
+ " if (existing_stylesheets.indexOf(url) !== -1) {\n",
+ "\ton_load()\n",
+ "\tcontinue;\n",
+ " }\n",
+ " const element = document.createElement(\"link\");\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.rel = \"stylesheet\";\n",
+ " element.type = \"text/css\";\n",
+ " element.href = url;\n",
+ " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
+ " document.body.appendChild(element);\n",
+ " } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n",
+ " var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n",
+ " for (var i = 0; i < urls.length; i++) {\n",
+ " skip.push(urls[i])\n",
+ " }\n",
+ " } if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n",
+ " var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n",
+ " for (var i = 0; i < urls.length; i++) {\n",
+ " skip.push(urls[i])\n",
+ " }\n",
+ " } if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n",
+ " var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n",
+ " for (var i = 0; i < urls.length; i++) {\n",
+ " skip.push(urls[i])\n",
+ " }\n",
+ " } var existing_scripts = []\n",
+ " var scripts = document.getElementsByTagName('script')\n",
+ " for (var i = 0; i < scripts.length; i++) {\n",
+ " var script = scripts[i]\n",
+ " if (script.src != null) {\n",
+ "\texisting_scripts.push(script.src)\n",
+ " }\n",
+ " }\n",
+ " for (var i = 0; i < js_urls.length; i++) {\n",
+ " var url = js_urls[i];\n",
+ " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n",
+ "\tif (!window.requirejs) {\n",
+ "\t on_load();\n",
+ "\t}\n",
+ "\tcontinue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (var i = 0; i < js_modules.length; i++) {\n",
+ " var url = js_modules[i];\n",
+ " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n",
+ "\tif (!window.requirejs) {\n",
+ "\t on_load();\n",
+ "\t}\n",
+ "\tcontinue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (const name in js_exports) {\n",
+ " var url = js_exports[name];\n",
+ " if (skip.indexOf(url) >= 0 || root[name] != null) {\n",
+ "\tif (!window.requirejs) {\n",
+ "\t on_load();\n",
+ "\t}\n",
+ "\tcontinue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " element.textContent = `\n",
+ " import ${name} from \"${url}\"\n",
+ " window.${name} = ${name}\n",
+ " window._bokeh_on_load()\n",
+ " `\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " if (!js_urls.length && !js_modules.length) {\n",
+ " on_load()\n",
+ " }\n",
+ " };\n",
+ "\n",
+ " function inject_raw_css(css) {\n",
+ " const element = document.createElement(\"style\");\n",
+ " element.appendChild(document.createTextNode(css));\n",
+ " document.body.appendChild(element);\n",
+ " }\n",
+ "\n",
+ " var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.3.2.min.js\", \"https://cdn.holoviz.org/panel/1.3.5/dist/panel.min.js\"];\n",
+ " var js_modules = [];\n",
+ " var js_exports = {};\n",
+ " var css_urls = [];\n",
+ " var inline_js = [ function(Bokeh) {\n",
+ " Bokeh.set_log_level(\"info\");\n",
+ " },\n",
+ "function(Bokeh) {} // ensure no trailing comma for IE\n",
+ " ];\n",
+ "\n",
+ " function run_inline_js() {\n",
+ " if ((root.Bokeh !== undefined) || (force === true)) {\n",
+ " for (var i = 0; i < inline_js.length; i++) {\n",
+ "\ttry {\n",
+ " inline_js[i].call(root, root.Bokeh);\n",
+ "\t} catch(e) {\n",
+ "\t if (!reloading) {\n",
+ "\t throw e;\n",
+ "\t }\n",
+ "\t}\n",
+ " }\n",
+ " // Cache old bokeh versions\n",
+ " if (Bokeh != undefined && !reloading) {\n",
+ "\tvar NewBokeh = root.Bokeh;\n",
+ "\tif (Bokeh.versions === undefined) {\n",
+ "\t Bokeh.versions = new Map();\n",
+ "\t}\n",
+ "\tif (NewBokeh.version !== Bokeh.version) {\n",
+ "\t Bokeh.versions.set(NewBokeh.version, NewBokeh)\n",
+ "\t}\n",
+ "\troot.Bokeh = Bokeh;\n",
+ " }} else if (Date.now() < root._bokeh_timeout) {\n",
+ " setTimeout(run_inline_js, 100);\n",
+ " } else if (!root._bokeh_failed_load) {\n",
+ " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
+ " root._bokeh_failed_load = true;\n",
+ " }\n",
+ " root._bokeh_is_initializing = false\n",
+ " }\n",
+ "\n",
+ " function load_or_wait() {\n",
+ " // Implement a backoff loop that tries to ensure we do not load multiple\n",
+ " // versions of Bokeh and its dependencies at the same time.\n",
+ " // In recent versions we use the root._bokeh_is_initializing flag\n",
+ " // to determine whether there is an ongoing attempt to initialize\n",
+ " // bokeh, however for backward compatibility we also try to ensure\n",
+ " // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n",
+ " // before older versions are fully initialized.\n",
+ " if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n",
+ " root._bokeh_is_initializing = false;\n",
+ " root._bokeh_onload_callbacks = undefined;\n",
+ " console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n",
+ " load_or_wait();\n",
+ " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n",
+ " setTimeout(load_or_wait, 100);\n",
+ " } else {\n",
+ " root._bokeh_is_initializing = true\n",
+ " root._bokeh_onload_callbacks = []\n",
+ " var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n",
+ " if (!reloading && !bokeh_loaded) {\n",
+ "\troot.Bokeh = undefined;\n",
+ " }\n",
+ " load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n",
+ "\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
+ "\trun_inline_js();\n",
+ " });\n",
+ " }\n",
+ " }\n",
+ " // Give older versions of the autoload script a head-start to ensure\n",
+ " // they initialize before we start loading newer version.\n",
+ " setTimeout(load_or_wait, 100)\n",
+ "}(window));"
+ ],
+ "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n var force = true;\n var py_version = '3.3.2'.replace('rc', '-rc.').replace('.dev', '-dev.');\n var reloading = false;\n var Bokeh = root.Bokeh;\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n run_callbacks();\n return null;\n }\n if (!reloading) {\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error() {\n console.error(\"failed to load \" + url);\n }\n\n var skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n require([\"jspanel\"], function(jsPanel) {\n\twindow.jsPanel = jsPanel\n\ton_load()\n })\n require([\"jspanel-modal\"], function() {\n\ton_load()\n })\n require([\"jspanel-tooltip\"], function() {\n\ton_load()\n })\n require([\"jspanel-hint\"], function() {\n\ton_load()\n })\n require([\"jspanel-layout\"], function() {\n\ton_load()\n })\n require([\"jspanel-contextmenu\"], function() {\n\ton_load()\n })\n require([\"jspanel-dock\"], function() {\n\ton_load()\n })\n require([\"gridstack\"], function(GridStack) {\n\twindow.GridStack = GridStack\n\ton_load()\n })\n require([\"notyf\"], function() {\n\ton_load()\n })\n root._bokeh_is_loading = css_urls.length + 9;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n var existing_stylesheets = []\n var links = document.getElementsByTagName('link')\n for (var i = 0; i < links.length; i++) {\n var link = links[i]\n if (link.href != null) {\n\texisting_stylesheets.push(link.href)\n }\n }\n for (var i = 0; i < css_urls.length; i++) {\n var url = css_urls[i];\n if (existing_stylesheets.indexOf(url) !== -1) {\n\ton_load()\n\tcontinue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.3.5/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.3.5/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } var existing_scripts = []\n var scripts = document.getElementsByTagName('script')\n for (var i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n\texisting_scripts.push(script.src)\n }\n }\n for (var i = 0; i < js_urls.length; i++) {\n var url = js_urls[i];\n if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (var i = 0; i < js_modules.length; i++) {\n var url = js_modules[i];\n if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n var url = js_exports[name];\n if (skip.indexOf(url) >= 0 || root[name] != null) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.3.2.min.js\", \"https://cdn.holoviz.org/panel/1.3.5/dist/panel.min.js\"];\n var js_modules = [];\n var js_exports = {};\n var css_urls = [];\n var inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (var i = 0; i < inline_js.length; i++) {\n\ttry {\n inline_js[i].call(root, root.Bokeh);\n\t} catch(e) {\n\t if (!reloading) {\n\t throw e;\n\t }\n\t}\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n\tvar NewBokeh = root.Bokeh;\n\tif (Bokeh.versions === undefined) {\n\t Bokeh.versions = new Map();\n\t}\n\tif (NewBokeh.version !== Bokeh.version) {\n\t Bokeh.versions.set(NewBokeh.version, NewBokeh)\n\t}\n\troot.Bokeh = Bokeh;\n }} else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n\troot.Bokeh = undefined;\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n\trun_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));"
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/javascript": [
+ "\n",
+ "if ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n",
+ " window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n",
+ "}\n",
+ "\n",
+ "\n",
+ " function JupyterCommManager() {\n",
+ " }\n",
+ "\n",
+ " JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n",
+ " if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
+ " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
+ " comm_manager.register_target(comm_id, function(comm) {\n",
+ " comm.on_msg(msg_handler);\n",
+ " });\n",
+ " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
+ " window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n",
+ " comm.onMsg = msg_handler;\n",
+ " });\n",
+ " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
+ " google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n",
+ " var messages = comm.messages[Symbol.asyncIterator]();\n",
+ " function processIteratorResult(result) {\n",
+ " var message = result.value;\n",
+ " console.log(message)\n",
+ " var content = {data: message.data, comm_id};\n",
+ " var buffers = []\n",
+ " for (var buffer of message.buffers || []) {\n",
+ " buffers.push(new DataView(buffer))\n",
+ " }\n",
+ " var metadata = message.metadata || {};\n",
+ " var msg = {content, buffers, metadata}\n",
+ " msg_handler(msg);\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " })\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n",
+ " if (comm_id in window.PyViz.comms) {\n",
+ " return window.PyViz.comms[comm_id];\n",
+ " } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
+ " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
+ " var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n",
+ " if (msg_handler) {\n",
+ " comm.on_msg(msg_handler);\n",
+ " }\n",
+ " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
+ " var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n",
+ " comm.open();\n",
+ " if (msg_handler) {\n",
+ " comm.onMsg = msg_handler;\n",
+ " }\n",
+ " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
+ " var comm_promise = google.colab.kernel.comms.open(comm_id)\n",
+ " comm_promise.then((comm) => {\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " if (msg_handler) {\n",
+ " var messages = comm.messages[Symbol.asyncIterator]();\n",
+ " function processIteratorResult(result) {\n",
+ " var message = result.value;\n",
+ " var content = {data: message.data};\n",
+ " var metadata = message.metadata || {comm_id};\n",
+ " var msg = {content, metadata}\n",
+ " msg_handler(msg);\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " }) \n",
+ " var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
+ " return comm_promise.then((comm) => {\n",
+ " comm.send(data, metadata, buffers, disposeOnDone);\n",
+ " });\n",
+ " };\n",
+ " var comm = {\n",
+ " send: sendClosure\n",
+ " };\n",
+ " }\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " return comm;\n",
+ " }\n",
+ " window.PyViz.comm_manager = new JupyterCommManager();\n",
+ " \n",
+ "\n",
+ "\n",
+ "var JS_MIME_TYPE = 'application/javascript';\n",
+ "var HTML_MIME_TYPE = 'text/html';\n",
+ "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
+ "var CLASS_NAME = 'output';\n",
+ "\n",
+ "/**\n",
+ " * Render data to the DOM node\n",
+ " */\n",
+ "function render(props, node) {\n",
+ " var div = document.createElement(\"div\");\n",
+ " var script = document.createElement(\"script\");\n",
+ " node.appendChild(div);\n",
+ " node.appendChild(script);\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when a new output is added\n",
+ " */\n",
+ "function handle_add_output(event, handle) {\n",
+ " var output_area = handle.output_area;\n",
+ " var output = handle.output;\n",
+ " if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
+ " return\n",
+ " }\n",
+ " var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
+ " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
+ " if (id !== undefined) {\n",
+ " var nchildren = toinsert.length;\n",
+ " var html_node = toinsert[nchildren-1].children[0];\n",
+ " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var scripts = [];\n",
+ " var nodelist = html_node.querySelectorAll(\"script\");\n",
+ " for (var i in nodelist) {\n",
+ " if (nodelist.hasOwnProperty(i)) {\n",
+ " scripts.push(nodelist[i])\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " scripts.forEach( function (oldScript) {\n",
+ " var newScript = document.createElement(\"script\");\n",
+ " var attrs = [];\n",
+ " var nodemap = oldScript.attributes;\n",
+ " for (var j in nodemap) {\n",
+ " if (nodemap.hasOwnProperty(j)) {\n",
+ " attrs.push(nodemap[j])\n",
+ " }\n",
+ " }\n",
+ " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
+ " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
+ " oldScript.parentNode.replaceChild(newScript, oldScript);\n",
+ " });\n",
+ " if (JS_MIME_TYPE in output.data) {\n",
+ " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
+ " }\n",
+ " output_area._hv_plot_id = id;\n",
+ " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
+ " window.PyViz.plot_index[id] = Bokeh.index[id];\n",
+ " } else {\n",
+ " window.PyViz.plot_index[id] = null;\n",
+ " }\n",
+ " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
+ " var bk_div = document.createElement(\"div\");\n",
+ " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var script_attrs = bk_div.children[0].attributes;\n",
+ " for (var i = 0; i < script_attrs.length; i++) {\n",
+ " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
+ " }\n",
+ " // store reference to server id on output_area\n",
+ " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when an output is cleared or removed\n",
+ " */\n",
+ "function handle_clear_output(event, handle) {\n",
+ " var id = handle.cell.output_area._hv_plot_id;\n",
+ " var server_id = handle.cell.output_area._bokeh_server_id;\n",
+ " if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
+ " var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
+ " if (server_id !== null) {\n",
+ " comm.send({event_type: 'server_delete', 'id': server_id});\n",
+ " return;\n",
+ " } else if (comm !== null) {\n",
+ " comm.send({event_type: 'delete', 'id': id});\n",
+ " }\n",
+ " delete PyViz.plot_index[id];\n",
+ " if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
+ " var doc = window.Bokeh.index[id].model.document\n",
+ " doc.clear();\n",
+ " const i = window.Bokeh.documents.indexOf(doc);\n",
+ " if (i > -1) {\n",
+ " window.Bokeh.documents.splice(i, 1);\n",
+ " }\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle kernel restart event\n",
+ " */\n",
+ "function handle_kernel_cleanup(event, handle) {\n",
+ " delete PyViz.comms[\"hv-extension-comm\"];\n",
+ " window.PyViz.plot_index = {}\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle update_display_data messages\n",
+ " */\n",
+ "function handle_update_output(event, handle) {\n",
+ " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
+ " handle_add_output(event, handle)\n",
+ "}\n",
+ "\n",
+ "function register_renderer(events, OutputArea) {\n",
+ " function append_mime(data, metadata, element) {\n",
+ " // create a DOM node to render to\n",
+ " var toinsert = this.create_output_subarea(\n",
+ " metadata,\n",
+ " CLASS_NAME,\n",
+ " EXEC_MIME_TYPE\n",
+ " );\n",
+ " this.keyboard_manager.register_events(toinsert);\n",
+ " // Render to node\n",
+ " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
+ " render(props, toinsert[0]);\n",
+ " element.append(toinsert);\n",
+ " return toinsert\n",
+ " }\n",
+ "\n",
+ " events.on('output_added.OutputArea', handle_add_output);\n",
+ " events.on('output_updated.OutputArea', handle_update_output);\n",
+ " events.on('clear_output.CodeCell', handle_clear_output);\n",
+ " events.on('delete.Cell', handle_clear_output);\n",
+ " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
+ "\n",
+ " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
+ " safe: true,\n",
+ " index: 0\n",
+ " });\n",
+ "}\n",
+ "\n",
+ "if (window.Jupyter !== undefined) {\n",
+ " try {\n",
+ " var events = require('base/js/events');\n",
+ " var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
+ " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
+ " register_renderer(events, OutputArea);\n",
+ " }\n",
+ " } catch(err) {\n",
+ " }\n",
+ "}\n"
+ ],
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function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n"
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
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+ "<style>*[data-root-id],\n",
+ "*[data-root-id] > * {\n",
+ " box-sizing: border-box;\n",
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+ " font-size: var(--jp-ui-font-size1);\n",
+ " color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
+ "}\n",
+ "\n",
+ "/* Override VSCode background color */\n",
+ ".cell-output-ipywidget-background:has(\n",
+ " > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
+ " ),\n",
+ ".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
+ " background-color: transparent !important;\n",
+ "}\n",
+ "</style>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
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+ "data": {
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+ "text/html": [
+ "<div id='cb1f3ccd-d267-45bf-9c15-a456bb3b55bd'>\n",
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+ " } else if (root.Bokeh.version === py_version) {\n",
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+ "\t }\n",
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+ " }\n",
+ " }, 25, root)\n",
+ " }\n",
+ "})(window);</script>"
+ ]
+ },
+ "metadata": {
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+ "output_type": "display_data"
+ },
+ {
+ "data": {},
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+ "output_type": "display_data"
+ },
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+ "data": {
+ "application/vnd.holoviews_exec.v0+json": "",
+ "text/html": [
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+ "</div>\n",
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</tbody>\\n</table>\",\"disable_math\":true}}]}}]}}]}},{\"type\":\"object\",\"name\":\"panel.models.comm_manager.CommManager\",\"id\":\"b9c637bc-2af6-48ba-979d-006a48f73fd3\",\"attributes\":{\"plot_id\":\"16c1a687-f135-4a8d-a655-dc982e259fab\",\"comm_id\":\"dd92ccaed7c64749b90e9bf7d4e49d8c\",\"client_comm_id\":\"5d3156c7ceef4ec5943df1c81dd8b893\"}}],\"defs\":[{\"type\":\"model\",\"name\":\"ReactiveHTML1\"},{\"type\":\"model\",\"name\":\"FlexBox1\",\"properties\":[{\"name\":\"align_content\",\"kind\":\"Any\",\"default\":\"flex-start\"},{\"name\":\"align_items\",\"kind\":\"Any\",\"default\":\"flex-start\"},{\"name\":\"flex_direction\",\"kind\":\"Any\",\"default\":\"row\"},{\"name\":\"flex_wrap\",\"kind\":\"Any\",\"default\":\"wrap\"},{\"name\":\"justify_content\",\"kind\":\"Any\",\"default\":\"flex-start\"}]},{\"type\":\"model\",\"name\":\"FloatPanel1\",\"properties\":[{\"name\":\"config\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"contained\",\"kind\":\"Any\",\"default\":true},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"right-top\"},{\"name\":\"offsetx\",\"kind\":\"Any\",\"default\":null},{\"name\":\"offsety\",\"kind\":\"Any\",\"default\":null},{\"name\":\"theme\",\"kind\":\"Any\",\"default\":\"primary\"},{\"name\":\"status\",\"kind\":\"Any\",\"default\":\"normalized\"}]},{\"type\":\"model\",\"name\":\"GridStack1\",\"properties\":[{\"name\":\"mode\",\"kind\":\"Any\",\"default\":\"warn\"},{\"name\":\"ncols\",\"kind\":\"Any\",\"default\":null},{\"name\":\"nrows\",\"kind\":\"Any\",\"default\":null},{\"name\":\"allow_resize\",\"kind\":\"Any\",\"default\":true},{\"name\":\"allow_drag\",\"kind\":\"Any\",\"default\":true},{\"name\":\"state\",\"kind\":\"Any\",\"default\":[]}]},{\"type\":\"model\",\"name\":\"drag1\",\"properties\":[{\"name\":\"slider_width\",\"kind\":\"Any\",\"default\":5},{\"name\":\"slider_color\",\"kind\":\"Any\",\"default\":\"black\"},{\"name\":\"value\",\"kind\":\"Any\",\"default\":50}]},{\"type\":\"model\",\"name\":\"click1\",\"properties\":[{\"name\":\"terminal_output\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"debug_name\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"clears\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"copy_to_clipboard1\",\"properties\":[{\"name\":\"fill\",\"kind\":\"Any\",\"default\":\"none\"},{\"name\":\"value\",\"kind\":\"Any\",\"default\":null}]},{\"type\":\"model\",\"name\":\"FastWrapper1\",\"properties\":[{\"name\":\"object\",\"kind\":\"Any\",\"default\":null},{\"name\":\"style\",\"kind\":\"Any\",\"default\":null}]},{\"type\":\"model\",\"name\":\"NotificationAreaBase1\",\"properties\":[{\"name\":\"js_events\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"bottom-right\"},{\"name\":\"_clear\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"NotificationArea1\",\"properties\":[{\"name\":\"js_events\",\"kind\":\"Any\",\"default\":{\"type\":\"map\"}},{\"name\":\"notifications\",\"kind\":\"Any\",\"default\":[]},{\"name\":\"position\",\"kind\":\"Any\",\"default\":\"bottom-right\"},{\"name\":\"_clear\",\"kind\":\"Any\",\"default\":0},{\"name\":\"types\",\"kind\":\"Any\",\"default\":[{\"type\":\"map\",\"entries\":[[\"type\",\"warning\"],[\"background\",\"#ffc107\"],[\"icon\",{\"type\":\"map\",\"entries\":[[\"className\",\"fas fa-exclamation-triangle\"],[\"tagName\",\"i\"],[\"color\",\"white\"]]}]]},{\"type\":\"map\",\"entries\":[[\"type\",\"info\"],[\"background\",\"#007bff\"],[\"icon\",{\"type\":\"map\",\"entries\":[[\"className\",\"fas fa-info-circle\"],[\"tagName\",\"i\"],[\"color\",\"white\"]]}]]}]}]},{\"type\":\"model\",\"name\":\"Notification\",\"properties\":[{\"name\":\"background\",\"kind\":\"Any\",\"default\":null},{\"name\":\"duration\",\"kind\":\"Any\",\"default\":3000},{\"name\":\"icon\",\"kind\":\"Any\",\"default\":null},{\"name\":\"message\",\"kind\":\"Any\",\"default\":\"\"},{\"name\":\"notification_type\",\"kind\":\"Any\",\"default\":null},{\"name\":\"_destroyed\",\"kind\":\"Any\",\"default\":false}]},{\"type\":\"model\",\"name\":\"TemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"BootstrapTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]},{\"type\":\"model\",\"name\":\"MaterialTemplateActions1\",\"properties\":[{\"name\":\"open_modal\",\"kind\":\"Any\",\"default\":0},{\"name\":\"close_modal\",\"kind\":\"Any\",\"default\":0}]}]}};\n",
+ " var render_items = [{\"docid\":\"2df3f4e9-ab8b-4a5c-a3b3-aaaa60d69830\",\"roots\":{\"16c1a687-f135-4a8d-a655-dc982e259fab\":\"de62f20f-d89f-4cb4-a57f-ab270c1f2481\"},\"root_ids\":[\"16c1a687-f135-4a8d-a655-dc982e259fab\"]}];\n",
+ " var docs = Object.values(docs_json)\n",
+ " if (!docs) {\n",
+ " return\n",
+ " }\n",
+ " const py_version = docs[0].version.replace('rc', '-rc.').replace('.dev', '-dev.')\n",
+ " function embed_document(root) {\n",
+ " var Bokeh = get_bokeh(root)\n",
+ " Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
+ " for (const render_item of render_items) {\n",
+ " for (const root_id of render_item.root_ids) {\n",
+ "\tconst id_el = document.getElementById(root_id)\n",
+ "\tif (id_el.children.length && (id_el.children[0].className === 'bk-root')) {\n",
+ "\t const root_el = id_el.children[0]\n",
+ "\t root_el.id = root_el.id + '-rendered'\n",
+ "\t}\n",
+ " }\n",
+ " }\n",
+ " }\n",
+ " function get_bokeh(root) {\n",
+ " if (root.Bokeh === undefined) {\n",
+ " return null\n",
+ " } else if (root.Bokeh.version !== py_version) {\n",
+ " if (root.Bokeh.versions === undefined || !root.Bokeh.versions.has(py_version)) {\n",
+ "\treturn null\n",
+ " }\n",
+ " return root.Bokeh.versions.get(py_version);\n",
+ " } else if (root.Bokeh.version === py_version) {\n",
+ " return root.Bokeh\n",
+ " }\n",
+ " return null\n",
+ " }\n",
+ " function is_loaded(root) {\n",
+ " var Bokeh = get_bokeh(root)\n",
+ " return (Bokeh != null && Bokeh.Panel !== undefined)\n",
+ " }\n",
+ " if (is_loaded(root)) {\n",
+ " embed_document(root);\n",
+ " } else {\n",
+ " var attempts = 0;\n",
+ " var timer = setInterval(function(root) {\n",
+ " if (is_loaded(root)) {\n",
+ " clearInterval(timer);\n",
+ " embed_document(root);\n",
+ " } else if (document.readyState == \"complete\") {\n",
+ " attempts++;\n",
+ " if (attempts > 200) {\n",
+ " clearInterval(timer);\n",
+ "\t var Bokeh = get_bokeh(root)\n",
+ "\t if (Bokeh == null || Bokeh.Panel == null) {\n",
+ " console.warn(\"Panel: ERROR: Unable to run Panel code because Bokeh or Panel library is missing\");\n",
+ "\t } else {\n",
+ "\t console.warn(\"Panel: WARNING: Attempting to render but not all required libraries could be resolved.\")\n",
+ "\t embed_document(root)\n",
+ "\t }\n",
+ " }\n",
+ " }\n",
+ " }, 25, root)\n",
+ " }\n",
+ "})(window);</script>"
+ ],
+ "text/plain": [
+ "Column(css_classes=['scrollable-vertical'], scroll=True, sizing_mode='stretch_both', styles={'background': '...})\n",
+ " [0] Markdown(str)\n",
+ " [1] Row\n",
+ " [0] Markdown(str)\n",
+ " [1] ParamMethod(method, _pane=Matplotlib, defer_load=False)\n",
+ " [2] Column(margin=(5, 10))\n",
+ " [0] StaticText(value='<b></b>')\n",
+ " [1] Select(name='Species', options=OrderedDict([('O. barthii'...]), value='O. barthii')\n",
+ " [3] Row(css_classes=['scrollable-horizontal'], height=400, scroll=True, sizing_mode='fixed', width=800)\n",
+ " [0] ParamMethod(method, _pane=DataFrame, defer_load=False)"
+ ]
+ },
+ "metadata": {
+ "application/vnd.holoviews_exec.v0+json": {
+ "id": "16c1a687-f135-4a8d-a655-dc982e259fab"
+ }
+ },
+ "output_type": "display_data"
}
],
"source": [
"# Reading group file\n",
- "id_dict, df_group = read_group_file(group_file.value,logger)\n",
+ "id_dict, df_group = frangiPANe.read_group_file(group_file)\n",
"\n",
"# Group file dashboard\n",
- "dashboard_group(df_group)\n",
- "bgc('LightBlue')"
+ "gs.dashboard_group(df_group)\n",
+ "#bgc('LightBlue')"
]
},
{
@@ -282,7 +1732,7 @@
"metadata": {
"hide_input": false,
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -296,7 +1746,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.8.10"
+ "version": "3.10.12"
}
},
"nbformat": 4,
diff --git a/frangiPANe/snakefiles/generate_jupyter_book.smk b/frangiPANe/snakefiles/generate_jupyter_book.smk
index 308016be2309b879a8746753af9520df05980be8..f54cdc1f9602b5bcd484b3f0d242cc1791988afb 100644
--- a/frangiPANe/snakefiles/generate_jupyter_book.smk
+++ b/frangiPANe/snakefiles/generate_jupyter_book.smk
@@ -2,7 +2,8 @@ rule generate_jupyter_book:
input:
jb_file=f"{ frangipane_obj.install_path }/report/frangiPANe_report.ipynb",
ref_png=f"{frangipane_obj.path_stat_plot}/00_ref.png",
- ref_csv = f"{frangipane_obj.path_stat_sum}/00_ref.txt"
+ ref_csv = f"{frangipane_obj.path_stat_sum}/00_ref.txt",
+ fastq_csv= merge_fastq_stats.stat_file
output:
jb_file=f"{ frangipane_obj.path_output }/report/frangiPANe_stats.ipynb"
params:
diff --git a/frangiPANe/snakemake_scripts/generate_jb_frangiPANe.py b/frangiPANe/snakemake_scripts/generate_jb_frangiPANe.py
index 92777a5218cbf1cb67fe480defcd27f38e25c820..1df3c2d7c1cedad76903e363da9f37c974b302df 100644
--- a/frangiPANe/snakemake_scripts/generate_jb_frangiPANe.py
+++ b/frangiPANe/snakemake_scripts/generate_jb_frangiPANe.py
@@ -15,6 +15,7 @@ dico = {
"group_file": snakemake.params.group_file,
"ref_png" : snakemake.input.ref_png,
"ref_csv" : snakemake.input.ref_csv,
+ "stat_file": snakemake.input.fastq_csv
}
with open(jb_input, "r", encoding="utf-8") as notebook_file: