From 4a25029e8d626f5966630024741c4bbce75f2a14 Mon Sep 17 00:00:00 2001
From: christine <christine.tranchant@ird.fr>
Date: Sat, 6 Jan 2024 16:58:45 +0100
Subject: [PATCH] correcting path
---
frangiPANe/snakefiles/plot_fasta.smk | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/frangiPANe/snakefiles/plot_fasta.smk b/frangiPANe/snakefiles/plot_fasta.smk
index bd32d2b..5135477 100644
--- a/frangiPANe/snakefiles/plot_fasta.smk
+++ b/frangiPANe/snakefiles/plot_fasta.smk
@@ -2,8 +2,8 @@ rule plot_fasta:
input:
ref=rules.bwa_index.input.ref
output:
- png = f"{path_dico['plot']}/00_{ref_basename}.png",
- csv = f"{path_dico['sum']}/00_{ref_basename}.txt"
+ png = f"{frangipane_obj.path_stat_plot}/00_{ref_basename}.png",
+ csv = f"{frangipane_obj.path_stat_sum}/00_{ref_basename}.txt"
log:
output = f"{frangipane_obj.path_logs}/report/plot_fasta.o",
error = f"{frangipane_obj.path_logs}/report/plot_fasta.e"
--
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