From 2ac24a640ae7c0cbe240ecaaa9dbca5e20f69418 Mon Sep 17 00:00:00 2001
From: christine <christine.tranchant@ird.Fr>
Date: Sat, 6 Jan 2024 18:22:54 +0100
Subject: [PATCH] Integrating plot ref
---
frangiPANe/report/frangiPANe_stats.ipynb | 11 ++++-------
1 file changed, 4 insertions(+), 7 deletions(-)
diff --git a/frangiPANe/report/frangiPANe_stats.ipynb b/frangiPANe/report/frangiPANe_stats.ipynb
index 5ff74b7..1404d63 100644
--- a/frangiPANe/report/frangiPANe_stats.ipynb
+++ b/frangiPANe/report/frangiPANe_stats.ipynb
@@ -3,15 +3,12 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "6c56e93f",
+ "id": "f0516f8e",
"metadata": {},
"outputs": [],
"source": [
- "out_dir = '/scratch/tranchant/rice-output'\n",
- "fastq_dir = '/scratch/tranchant/data_test/fastq'\n",
- "group_file = '/scratch/tranchant/data_test/rice_group.txt'\n",
- "ref_file = '/scratch/tranchant/data_test/ref.fasta'\n",
- "vec_file = '/scratch/tranchant/data_test/bank/UniVec_Core'\n"
+ "ref_png = '/scratch/tranchant/rice-output/04-stats/04-plots/00_ref.png'\n",
+ "ref_csv = '/scratch/tranchant/rice-output/04-stats/04-summary/00_ref.txt'\n"
]
},
{
@@ -34,7 +31,7 @@
"metadata": {},
"outputs": [],
"source": [
- "print(project_name, out_dir, ref_file, vec_file, group_file, fastq_dir) #,cpus)"
+ "print(out_dir, ref_file, vec_file, group_file, fastq_dir) #,cpus)"
]
},
{
--
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