diff --git a/frangiPANe/report/frangiPANe_stats.ipynb b/frangiPANe/report/frangiPANe_stats.ipynb index 5ff74b71bfcea446f24cc919b2bd270f5427d1be..1404d63553c21658e0ee7d16304b9a7243e93c91 100644 --- a/frangiPANe/report/frangiPANe_stats.ipynb +++ b/frangiPANe/report/frangiPANe_stats.ipynb @@ -3,15 +3,12 @@ { "cell_type": "code", "execution_count": null, - "id": "6c56e93f", + "id": "f0516f8e", "metadata": {}, "outputs": [], "source": [ - "out_dir = '/scratch/tranchant/rice-output'\n", - "fastq_dir = '/scratch/tranchant/data_test/fastq'\n", - "group_file = '/scratch/tranchant/data_test/rice_group.txt'\n", - "ref_file = '/scratch/tranchant/data_test/ref.fasta'\n", - "vec_file = '/scratch/tranchant/data_test/bank/UniVec_Core'\n" + "ref_png = '/scratch/tranchant/rice-output/04-stats/04-plots/00_ref.png'\n", + "ref_csv = '/scratch/tranchant/rice-output/04-stats/04-summary/00_ref.txt'\n" ] }, { @@ -34,7 +31,7 @@ "metadata": {}, "outputs": [], "source": [ - "print(project_name, out_dir, ref_file, vec_file, group_file, fastq_dir) #,cpus)" + "print(out_dir, ref_file, vec_file, group_file, fastq_dir) #,cpus)" ] }, {