From 0b9aeb50be8e43b814cc66b1c1ba1166689914a5 Mon Sep 17 00:00:00 2001
From: christine <christine.tranchant@ird.fr>
Date: Fri, 26 Jan 2024 14:19:40 +0100
Subject: [PATCH] typage length
---
frangiPANe/snakemake_scripts/vecscreen.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/frangiPANe/snakemake_scripts/vecscreen.py b/frangiPANe/snakemake_scripts/vecscreen.py
index 6dfd448..dbd0730 100644
--- a/frangiPANe/snakemake_scripts/vecscreen.py
+++ b/frangiPANe/snakemake_scripts/vecscreen.py
@@ -65,7 +65,7 @@ with open(os.path.join(output_fasta), "w") as o:
if min_bounds == min_seq + 1:
min_seq = max_bounds
new_length = max_seq - max_bounds
- if new_length >= params_ length:
+ if new_length >= params_length:
header_fields = str(seq.description).split()
o.write('>' + header_fields[0] + " " + str(new_length) + " " + " ".join(
header_fields[2:]) + '\n')
--
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