diff --git a/inference.py b/inference.py index 7a21b7d1eff623d8a4603b0028356c8103e0cc30..f7c29a8c1587cdfee225aacc9e6f16cba66335f1 100644 --- a/inference.py +++ b/inference.py @@ -319,7 +319,7 @@ for cds_id in cds_var.keys(): # while printing the effect of the first snp we aso use the second one. else: # size diff !=3k - print("frameshift variation") + print("variation causing a frameshift") old_frameshift=frame_shift frame_shift=(frame_shift+length_ref-length_alt)%3 #Â frameshift=0 -> reading frame recovered. may need to get a base before. @@ -342,8 +342,8 @@ for cds_id in cds_var.keys(): len_fragment_after_ins=(3-(len_fragment_before_ins+length_alt))%3 total_ins=sequence_target[posVar[1]-len_fragment_before_ins:posVar[1]+length_alt+len_fragment_after_ins] total_del=cds.sequence[posVar[0]-len_fragment_before_del:posVar[0]+length_ref+len_fragment_after_del] - stop=print_variation_change(total_del,total_ins) print("recovery of the original reading frame") + stop=print_variation_change(total_del,total_ins) if stop: break @@ -379,6 +379,5 @@ for cds_id in cds_var.keys(): if stop: break - - - print("\n") \ No newline at end of file + print("\n") +