diff --git a/README.md b/README.md index 911fc13aa69ad48379c7f0b759d4d128fde97105..64d324b1f4a2fab80de87d877f1c0e40c8cefbff 100644 --- a/README.md +++ b/README.md @@ -3,8 +3,7 @@ GrAnnoT is an annotation transfer tool for pangenome graphs. It can transfer genome annotations to a pangenome graph containing the genome, and also transfer the pangenome graph's annotations on the genomes it contains. This project is young and in development, some errors will be corrected, improvements will be made and new features will appear in the near future. -##Â Usage - +## Usage GrAnnoT requires the graph to be in GFA format with W-lines that describe the walks of the input genomes. For example minigraph-cactus gives that kind of output. You first need to extract from the GFA the positions of the segments of the graph on the genomes it contains. For this you need to run the script getSegmentsCoordinates.py with the GFA file as input.