From 3c46df46e05062e62df1ec2d1b862b18bbcaa737 Mon Sep 17 00:00:00 2001
From: NMarthe <nina.marthe@ird.fr>
Date: Tue, 5 Dec 2023 15:51:25 +0100
Subject: [PATCH] fixed argument usage
---
main.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/main.py b/main.py
index 97aeda6..902f4f0 100755
--- a/main.py
+++ b/main.py
@@ -31,7 +31,7 @@ if run=="command_line":
out_detail=pos_seg.split("/")[-1].split(".")[0:-1][0]+"_detail.gff"
out_var=pos_seg.split("/")[-1].split(".")[0:-1][0]+"_variations.txt"
if len(sys.argv)==5:
- target_genome_name=sys.argv[5]
+ target_genome_name=sys.argv[4]
else:
target_genome_name=pos_seg.split("/")[-1].split(".")[0:-1][0]
--
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