.. modspa-pixel documentation master file, created by
   sphinx-quickstart on Wed Aug 23 14:38:42 2023.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

ModSpa-Pixel
========================================

ModSpa pixel is an adaptation of the existing `modspa <https://gitlab.cesbio.omp.eu/modelisation/modspa>`_ processing chain. It uses a mix of satellite data (optical and weather data) to run models like `SAMIR or SAFY <https://www.cesbio.cnrs.fr/la-recherche/activites/modeliser-codes-et-modelisation/liste-et-descriptif-des-modeles/modspa/>`_ (*only SAMIR is currently supported*) on spatialized data. The previous modspa version used ``pandas dataframes`` to run the SAMIR model on the **parcel scale** (inputs are satellite data aggregated to the parcel scale). ModSpa pixel uses ``numpy`` to run the SAMIR model at the **pixel scale**. This allows for higher resolution modelisation at the cost of an increase in storage and calculation requirements. However, this ModSpa version can still run at the parcel scale, the user can **choose between parcel and pixel mode**.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   setup/setup
   preprocessing/input_preparation
   samir/run_samir
   file_structure

.. note::

   This project is under active development.

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`