From e40645ffe35f09daf9fba529d5c5c3012f1e090f Mon Sep 17 00:00:00 2001
From: Philippe Verley <philippe.verley@ird.fr>
Date: Mon, 15 Mar 2021 11:44:22 +0000
Subject: [PATCH] Updated references to spatstat specific packages in man pages
---
R/util.R | 2 --
man/demopat.Rd | 6 +++---
man/spp.Rd | 8 ++++----
man/swin.Rd | 8 ++++----
4 files changed, 11 insertions(+), 13 deletions(-)
diff --git a/R/util.R b/R/util.R
index 985ee28..4de6f23 100755
--- a/R/util.R
+++ b/R/util.R
@@ -284,8 +284,6 @@ in.poly<-function(x,y,poly,bdry=TRUE) {
warning("argument 'bdry' automatically set to FALSE. No alternative implemented yet")
}
stopifnot(is.poly(poly))
- xp <- poly$x
- yp <- poly$y
npts <- length(x)
nedg <- length(poly$x) # sic
xmi<-ifelse(min(x)<=min(poly$x),min(x),min(poly$x))
diff --git a/man/demopat.Rd b/man/demopat.Rd
index d8ddf2a..e96172e 100755
--- a/man/demopat.Rd
+++ b/man/demopat.Rd
@@ -2,17 +2,17 @@
\encoding{latin1}
\alias{demopat}
\docType{data}
-\title{Artificial Data Point Pattern from \code{spatstat} package.}
+\title{Artificial Data Point Pattern from \code{spatstat.data} package.}
\description{
This is an artificial dataset, for use in testing and demonstrating compatibility between \code{spatstat} and \code{ads} objects. It is a multitype point pattern in an irregular polygonal window.
There are two types of points. The window contains a polygonal hole.
}
\usage{data(demopat)}
\format{
-An object of class "ppp" representing a \code{spatstat} point pattern.
+An object of class "ppp" representing a \code{spatstat.core} point pattern.
}
\source{
- data(demopat) in \code{spatstat}
+ data(demopat) in \code{spatstat.data}
}
\examples{
data(demopat)
diff --git a/man/spp.Rd b/man/spp.Rd
index 39f97cc..71518d9 100755
--- a/man/spp.Rd
+++ b/man/spp.Rd
@@ -24,7 +24,7 @@ ppp2spp(p)
complex sampling window (see \code{\link{swin}}).}
\item{marks}{(optional) a vector of mark values, which may be factor levels or numerical values (see Details).}
\item{int2fac}{if TRUE, integer marks are automatically coerced into factor levels.}
- \item{p}{a \code{"ppp"} object from package \code{spatstat}.}
+ \item{p}{a \code{"ppp"} object from package \code{spatstat.geom}.}
}
\details{
A spatial point pattern is assumed to have been observed within a specific
@@ -58,11 +58,11 @@ A spatial point pattern is assumed to have been observed within a specific
\item{\code{$marksout}}{(optional) a vector of the marks attached to points located outside the sampling window.}
}
\references{
- Goreaud, F. and Pélissier, R. 1999. On explicit formula of edge effect correction for Ripley's \emph{K}-function. \emph{Journal of Vegetation Science}, 10:433-438.
+ Goreaud, F. and P?lissier, R. 1999. On explicit formula of edge effect correction for Ripley's \emph{K}-function. \emph{Journal of Vegetation Science}, 10:433-438.
}
\note{
There are printing, summary and plotting methods for \code{"spp"} objects.\cr
-Function \code{ppp2spp} converts an \code{\link[spatstat]{ppp.object}} from package \code{spatstat} into an \code{"spp"} object.
+Function \code{ppp2spp} converts an \code{\link[spatstat.geom]{ppp.object}} from package \code{spatstat.geom} into an \code{"spp"} object.
}
\seealso{
\code{\link{plot.spp}},
@@ -105,7 +105,7 @@ Function \code{ppp2spp} converts an \code{\link[spatstat]{ppp.object}} from pack
plot(swrt, out=TRUE) # plot points outside the sampling window
- \dontrun{converting a ppp object from spatstat}
+ \dontrun{converting a ppp object from spatstat.geom}
data(demopat)
demo.spp<-ppp2spp(demopat)
plot(demo.spp)
diff --git a/man/swin.Rd b/man/swin.Rd
index bce930f..3ed9705 100755
--- a/man/swin.Rd
+++ b/man/swin.Rd
@@ -22,7 +22,7 @@
for a rectangle ; \code{c(x0,y0,r0)} for a circle.}
\item{triangles}{(optional) a list of triangles removed from a simple initial window to define a complex
sampling window (see Details).}`
- \item{w}{a \code{"owin"} object from package \code{spatstat}.}
+ \item{w}{a \code{"owin"} object from package \code{spatstat.geom}.}
}
\details{
A sampling window may be of simple or complex type. A simple sampling window may be a rectangle or a circle.
@@ -55,11 +55,11 @@ A sampling window may be of simple or complex type. A simple sampling window may
\item{\code{$triangles}}{(optional) vertices coordinates of triangles for a complex sampling window (see details).}
}
\references{
- Goreaud, F. and Pélissier, R. 1999. On explicit formula of edge effect correction for Ripley's \emph{K}-function. \emph{Journal of Vegetation Science}, 10:433-438.
+ Goreaud, F. and P?lissier, R. 1999. On explicit formula of edge effect correction for Ripley's \emph{K}-function. \emph{Journal of Vegetation Science}, 10:433-438.
}
\note{
There are printing, summary and plotting methods for \code{"swin"} objects.\cr
-Function \code{owin2swin} converts an \code{\link[spatstat]{owin.object}} from package \code{spatstat} into an \code{"swin"} object.
+Function \code{owin2swin} converts an \code{\link[spatstat.geom]{owin.object}} from package \code{spatstat.geom} into an \code{"swin"} object.
}
\seealso{
\code{\link{area.swin}},
@@ -101,7 +101,7 @@ Function \code{owin2swin} converts an \code{\link[spatstat]{owin.object}} from p
summary(wch)
plot(wch)
- \dontrun{converting an owin object from spatstat}
+ \dontrun{converting an owin object from spatstat.geom}
data(demopat)
demo.swin<-owin2swin(demopat$window)
plot(demo.swin)
--
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